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murphycj
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AGFusion
Python package to annotate and visualize gene fusions.
https://www.agfusion.app
MIT License
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Bump black from 22.10.0 to 24.3.0
#55
dependabot[bot]
opened
5 months ago
0
Certificate expired on www.agfusion.app
#54
roland-ewald
closed
9 months ago
2
can we use AGFusion for annotating gene fusions detected in plant?
#53
Fiza250
opened
1 year ago
0
Using agfusion build command for ensembl >v95?
#52
min-codes
opened
1 year ago
3
Add docker
#51
murphycj
closed
1 year ago
0
Fix Fusioninspector parser
#50
murphycj
closed
1 year ago
0
Can I use the input from FusionInspector.
#49
WangKang-Leo
closed
1 year ago
4
Support for LongGF
#48
murphycj
closed
1 year ago
0
Add parser for arriba
#47
murphycj
closed
1 year ago
0
Enhancement/38 star fusion input
#46
murphycj
closed
1 year ago
0
Fix bug in plotting
#45
murphycj
closed
1 year ago
2
Issues with agfusion batch: TypeError: save_images() got an unexpected keyword argument 'plot_WT'
#44
QianhuiXu
closed
1 year ago
1
Add CI/CD, code formatting, and fix tests.
#43
murphycj
closed
1 year ago
0
Please note that I do not actively maintain this repo anymore
#42
murphycj
closed
1 year ago
0
Add support for STAR-Fusion 1.10
#41
susannasiebert
closed
1 year ago
1
Bio.Alphabet has been removed from Biopython.
#40
fizwit
closed
1 year ago
1
support for LongGF (new fusion finder for long read sequences)
#39
parsboy66
closed
1 year ago
0
STAR-Fusion input
#38
immuneAI
closed
1 year ago
1
Support for arriba
#37
malachig
closed
1 year ago
1
Build database for Ensembl 100
#36
wenbostar
closed
3 years ago
4
Pyensembl Version
#35
hessmaria
closed
1 year ago
0
5' UTR sequence not included when 3' gene junction is in 5' UTR
#34
murphycj
opened
4 years ago
0
issue for running agfusion
#33
kat-yuan
closed
1 year ago
0
Potential dependency conflicts between agfusion and numpy
#32
NeolithEra
closed
1 year ago
1
Failing on gene names containing '/'
#31
stsergbg
closed
4 years ago
1
Frame issues
#30
komalsrathi
opened
5 years ago
4
Unable to download database(agfusion.homo_sapiens.94.db)
#29
ShahiRB
closed
5 years ago
2
Frameshift fusions warning
#28
stsergbg
closed
5 years ago
1
Ensembl 96 support
#27
stsergbg
closed
5 years ago
2
Add gene direction to the exons output file
#26
susannasiebert
closed
5 years ago
5
Unsupported species for H.sapiens ensembl 92
#25
zlskidmore
closed
5 years ago
3
Saving plots as pdf files
#24
msquatrito
closed
5 years ago
2
rename and type not working
#23
msquatrito
closed
5 years ago
5
what file is used for infusion algorithm?
#22
foxchase
closed
5 years ago
2
missing domain in output?
#21
ghost
closed
6 years ago
8
using annotate --WT option causes exception
#20
ghost
closed
6 years ago
4
Strange behavior calling fusion frame
#19
juferban
closed
6 years ago
1
Documention
#18
ahgillmo
closed
1 year ago
3
Can This tool used for DNAseq?
#17
haoziyeung
closed
6 years ago
2
please tag releases
#16
0xaf1f
closed
6 years ago
1
issue with batch
#15
kac2053
closed
7 years ago
6
trouble getting agfusion.homo_sapiens.87.db to work with AGFusion
#14
kac2053
closed
7 years ago
11
TypeError: iter() returned non-iterator of type
#13
StevenIg
closed
7 years ago
4
Include exon number
#12
murphycj
opened
7 years ago
1
Error plotting WT protein
#11
murphycj
closed
7 years ago
0
Remove .bak
#10
ralic
closed
7 years ago
0
Convert to Python3
#9
ralic
closed
7 years ago
0
Not able to see protein domain information
#8
Nitin123-4
closed
7 years ago
3
Plot wild-type proteins
#7
murphycj
closed
7 years ago
0
Ensembl perl db build
#6
murphycj
closed
7 years ago
0
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