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murphygroup / CellSegmentationEvaluator

Evaluating the quality of a cell segmentation method without reference.

MIT License

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Closed smith6jt-cop closed 11 months ago

smith6jt-cop commented 11 months ago

For anyone else having difficulty running the example data on WSL2 Ubuntu python 3.8, instead of using this from the README:

python seg_eval_main.py --img-dir [example_data/imgs/2D_CODEX.ome.tiff] --mask-dir [example_data/masks/2D_CODEX.ome.tiff]

Use this:

python seg_eval_main.py example_data/imgs/2D_CODEX.ome.tiff example_data/masks/2D_CODEX.ome.tiff

rfmurphy commented 11 months ago

Posting a corrected README.