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murphygroup / CellSegmentationEvaluator

Evaluating the quality of a cell segmentation method without reference.
MIT License
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option 2 of full pipeline #10

Open smith6jt-cop opened 7 months ago

smith6jt-cop commented 7 months ago

there is no img_dir prompt and my .tif file in the full_pipeline folder is not recognized

smith6jt-cop commented 7 months ago

problem occurs with any option after: python run_pipeline.py ./config.json

Traceback (most recent call last): File "/home/smith6jt/CellSegmentationEvaluator/full_pipeline/run_pipeline.py", line 5, in pipeline.argparse_wrapper() File "/home/smith6jt/CellSegmentationEvaluator/full_pipeline/pipeline/pipeline.py", line 68, in argparse_wrapper main(args.config_dir) File "/home/smith6jt/CellSegmentationEvaluator/full_pipeline/pipeline/pipeline.py", line 25, in main img_dirs = [config['img_dir']] KeyError: 'img_dir'