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murphygroup / CellSegmentationEvaluator

Evaluating the quality of a cell segmentation method without reference.
MIT License
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incorporate conversion to PyPI package #7

Closed rfmurphy closed 7 months ago

rfmurphy commented 7 months ago

Reconcile differences with the 3D cell segmentation evaluation code in 3DCellComposer. Convert seg_eval_pkg.py to a PyPI package named CellSegmentationEvaluator and import that package for use in SimpleCSE. Add new function CSE3D as an alternative to "single_method_eval_3D" so that inputs can be nd-arrays rather than AICSImage structures.