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murphygroup / CellSegmentationEvaluator

Evaluating the quality of a cell segmentation method without reference.
MIT License
7 stars 2 forks source link

pip install error #9

Open smith6jt-cop opened 7 months ago

smith6jt-cop commented 7 months ago

New conda environment in WSL

pip install CellSegmentationEvaluator

Collecting CellSegmentationEvaluator Using cached CellSegmentationEvaluator-1.5.9.tar.gz (25 kB) Preparing metadata (setup.py) ... done Collecting numpy (from CellSegmentationEvaluator) Using cached numpy-1.26.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) INFO: pip is looking at multiple versions of cellsegmentationevaluator to determine which version is compatible with other requirements. This could take a while. ERROR: Could not find a version that satisfies the requirement re (from cellsegmentationevaluator) (from versions: none) ERROR: No matching distribution found for re

ChaDub commented 4 months ago

Hello, did you find a solution ? I have the same problem when I want to install the package in a conda environment.

Thank you in advance !

smith6jt-cop commented 4 months ago

Unfortunately no, the authors did at one time respond and attempt to fix the issues with their code, but for some reason have now abandoned the repository. I can say that the problem above is related to the fact that there are packages listed as requirements which are included in the base distribution of python, so the requirement cannot be satisfied. You might try changing the requirements file, but I would expect plenty of bugs to work out.

ChaDub commented 4 months ago

Thank you so much for your answer ! I'll try that !

So you've never been able to install and test the package ?

smith6jt-cop commented 4 months ago

I was able to install and test the SimpleCSE before the most recent changes were made. I'm not sure if it will work now. The full pipeline never worked for me. You can look through the closed issues to see some of the problems.

ChaDub commented 3 months ago

Okay ! Thank you very much for your help !