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murphygroup / docker-cellorganizer-jupyter-notebook

CellOrganizer on Jupyter Notebook
http://www.cellorganizer.org
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Issue with demo3D11 #42

Closed icaoberg closed 5 years ago

icaoberg commented 5 years ago

The demo does not work

[I 02:40:32.195 NotebookApp](B Adapting to protocol v5.1 for kernel 096f6a5d-30d5-4b7b-8a0c-a7261209cb73
Running deployed version of slml2img
Attempting to read input file input.txt
Evaluating lines from input file
Making log directory /home/murphylab/cellorganizer/demos/3D/demo3D11/log

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%                       VALIDATING INPUT ARGUMENTS                      %
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Warning: Unable to train a protein shape model without images
> In img2slml>check_images_directory_paths (line 378)
  In img2slml (line 228)
[I 02:42:31.606 NotebookApp](B Saving file at /demos/3D/demo3D11/demo3D11.ipynb
icaoberg commented 5 years ago

Remove demo from this release.

Either add the 3D images to the release or have the demo download the image collection.

icaoberg commented 5 years ago

Demo removed.