Open DuangduangChen opened 1 year ago
bftools > 6 can make it
https://github.com/muschellij2/bftools/blob/1523f6fafc4566dfbcef09828ecaf02509e31622/configure#L2 - I'm using bftools 6.5. What version are you using?
Updated bftools version: https://downloads.openmicroscopy.org/bio-formats/6.11.0/artifacts/bftools.zip
This is what I'm typing into linux: ./bftools/bfconvert -debug -tilex 512 -tiley 512 -series 0 -compression LZW leica.scn leica_MAX/leica.tif Here is the link to the rose red image: https://github.com/DuangduangChen/DuangduangChen/blob/main/leica.tif
It works, but it has a problem. This is part of the debug message No update needed leica.scn
Could not find loci.formats.in.SlideBook6Reader
java.lang.ClassNotFoundException: loci.formats.in.SlideBook6Reader at java.base/jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:581) ~[na:na] at java.base/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178) ~[na:na] at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:522) ~[na:na] at java.base/java.lang.Class.forName0(Native Method) ~[na:na] at java.base/java.lang.Class.forName(Class.java:315) ~[na:na] at loci.formats.ClassList.parseLine(ClassList.java:196) ~[bioformats_package.jar:5.6.0] at loci.formats.ClassList.parseFile(ClassList.java:258) ~[bioformats_package.jar:5.6.0] at loci.formats.ClassList.(ClassList.java:138) ~[bioformats_package.jar:5.6.0] at loci.formats.ClassList.(ClassList.java:122) ~[bioformats_package.jar:5.6.0] at loci.formats.ImageReader.getDefaultReaderClasses(ImageReader.java:79) ~[bioformats_package.jar:5.6.0] at loci.formats.ImageReader.(ImageReader.java:116) ~[bioformats_package.jar:5.6.0] at loci.formats.tools.ImageConverter.testConvert(ImageConverter.java:346) ~[bioformats_package.jar:5.6.0] at loci.formats.tools.ImageConverter.main(ImageConverter.java:884) ~[bioformats_package.jar:5.6.0] processor is INTEL_64 os.arch is amd64 architecture is LINUX_64 os.name is linux architecture is LINUX_64 os.name is linux platform specific path is META-INF/lib/linux_64/ mappedLib is libturbojpeg.so