Share library error even after the export its path.

[sj-choi]

fslr experts and devlopers:

I encountered an error when I ran an R code on Rstudio on Xubuntu 18.04 LTS VirtualBox on Windows 10 host.

There was no issue with the Installation of {fslr} and {ATNsR}. I installed fsl v.5 using Neurodebian.

As you suggested I included the "export LD_LIBRARY_PATH=/usr/lib/fsl/5.0:$LD_LIBRARY_PATH" in my .profile file on my linux VM. This did not clear the error and it remains.

DSC.Coef = try(fsl_dice(img_1,img_2)) fslmaths: error while loading shared libraries: libnewimage.so: cannot open shared object file: No such file or directory fslmaths: error while loading shared libraries: libnewimage.so: cannot open shared object file: No such file or directory fslstats: error while loading shared libraries: libnewimage.so: cannot open shared object file: No such file or directory Error in system(cmd, intern = TRUE) : error in running command In addition: Warning messages: 1: In system(cmd, intern = intern) : error in running command 2: In system(cmd, intern = intern) : error in running command

If you have any remedy or suggestions for this error, it would be greatly appreciated.

Thank you. SC

[muschellij2]

Can you take a look at https://github.com/muschellij2/fslr/issues/8 - currently I don't think we support Neurodebian out of the box, but rather an FSL install.

[sj-choi]

Thank you very much for your quick reply! Option 1 did not work. Option 2 did work! I appreciate it!