Loading CAT12 resampled & smoothed surfaces

[MartinGell]

Good afternoon,

My apologies if this doesn't belong here, but I am unsure where else to post this.

I am trying to open a gifti cortical thickness file from CAT12 analysis pipeline that have been resampled and smoothed (step after segmentation resulting in one file for both hemispheres) using the readgii command and I am getting the below error:

Error in doc_parse_file(con, encoding = encoding, as_html = as_html, options = options) : Extra content at the end of the document [5] In addition: Warning message: In doc_parse_file(con, encoding = encoding, as_html = as_html, options = options) : xmlSAX2Characters: huge text nod [2]

In CAT12 naming convention this file is called: S15.mesh.thickness.resampled.(name).gii

I believe the file is not corrupted, as I have no problem loading it into Matlab using the gifti toolbox.

Any pointers to what could be going wrong will be highly appreciated,

Thank you!

[muschellij2]

I don’t really Actively maintain this package. Can you send me the file? I couldn’t find a full specification that really fit my needs and the time to do this. Hopefully I’ll be able to look at it in the next few weeks.

On Fri, Feb 7, 2020 at 8:49 AM MartinGell notifications@github.com wrote:

Good afternoon,

My apologies if this doesn't belong here, but I am unsure where else to post this.

I am trying to open a gifti cortical thickness file from CAT12 analysis pipeline that have been resampled and smoothed (step after segmentation resulting in one file for both hemispheres) using the readgii command and I am getting the below error:

Error in doc_parse_file(con, encoding = encoding, as_html = as_html, options = options) : Extra content at the end of the document [5] In addition: Warning message: In doc_parse_file(con, encoding = encoding, as_html = as_html, options = options) : xmlSAX2Characters: huge text nod [2]

In CAT12 naming convention this file is called: S15.mesh.thickness.resampled.(name).gii

I believe the file is not corrupted, as I have no problem loading it into Matlab using the gifti toolbox.

Any pointers to what could be going wrong will be highly appreciated,

Thank you!

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[MartinGell]

Hi,

Thank you for offering to look at this! I just invited you to a repo with the file in it.

Martin

[muschellij2]

I think this file is corrupted, trying fsleyes:

[muschellij2]

[MartinGell]

Strange...

[MartinGell]

Maybe there is something wrong with the file in the end. Thank you!