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muschellij2 / lungct

Segmentation and Analysis of Lung CT scans
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Updated segmentation code #3

Closed ryansar closed 5 years ago

ryansar commented 5 years ago

I cleaned up the segment_lung_lr code. It wasn't working because labelClusters from ANTsRCore was changed from the last version, and was labelling segmentations differently. It is fixed now.

I think we should also talk about cleaning up some of these other functions. For example, I don't think we need both register_lung and register_lung_mask.

muschellij2 commented 5 years ago

What happened to the airway segmentation?

ryansar commented 5 years ago

The airway segmentation wasn't meant to run on its own, just help the segment_lung_lr code, so I put it in that script instead.