Implement LRG mappings in position converter

mutalyzer / mutalyzer2

HGVS variant nomenclature checker

https://mutalyzer.nl

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Closed mutalyzerbot closed 8 years ago

mutalyzerbot commented 8 years ago

Original ticket: https://humgenprojects.lumc.nl/trac/mutalyzer/ticket/152 Original date: 2013/10/16 Original reporter: martijn

We now have LRG mapping information from the EBI (search for subject in mailbox: "LRG transcript, exon data").

We can implement this quite easily, except for the fact that some transcripts occur with more than one CDS annotation, for example TP53).

mutalyzerbot commented 8 years ago

Original date: 2013/10/16 Original reporter: martijn

See also #150.

mutalyzerbot commented 8 years ago

Original date: 2014/01/27 Original reporter: martijn

ftp://ftp.ebi.ac.uk/pub/databases/lrgex/list_LRGs_transcripts_GRCh37.txt The file is updated every night (10pm in UK).

mutalyzerbot commented 8 years ago

Original date: 2016/02/11 Original reporter: martijn