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mutalyzer / mutalyzer2

HGVS variant nomenclature checker
https://mutalyzer.nl
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Got problem while running on my local server #480

Closed HEKntg closed 5 years ago

HEKntg commented 5 years ago

Hi, I have deployed mutalyzer on my own local server, but I got problem while using JSON api... kcuser@ubuntu:/BIN/mutalyzer$ mutalyzer-service-json Listening on http://127.0.0.1:8082/ That seems ok. Then I use python requests to get data: url = 'http://127.0.0.1:8082/runMutalyzerLight?variant=NM_005228.4:c.2296_2297insTGGCCAGCG I got this: ERROR:spyne.application.server:Error 111 connecting to localhost:6379. Connection refused. Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/spyne/application.py", line 151, in process_request ctx.out_object = self.call_wrapper(ctx) File "/usr/local/lib/python2.7/dist-packages/spyne/application.py", line 235, in call_wrapper retval = ctx.descriptor.service_class.call_wrapper(ctx) File "/usr/local/lib/python2.7/dist-packages/spyne/service.py", line 207, in call_wrapper return ctx.function(*args) File "/usr/local/lib/python2.7/dist-packages/mutalyzer-2.0.31.dev0-py2.7.egg/mutalyzer/services/rpc.py", line 1216, in runMutalyzerLight stats.increment_counter('name-checker/webservice') File "/usr/local/lib/python2.7/dist-packages/mutalyzer-2.0.31.dev0-py2.7.egg/mutalyzer/stats.py", line 50, in increment_counter pipe.execute() File "/usr/local/lib/python2.7/dist-packages/redis/client.py", line 2641, in execute return execute(conn, stack, raise_on_error) File "/usr/local/lib/python2.7/dist-packages/redis/client.py", line 2556, in _execute_pipeline connection.send_packed_command(all_cmds) File "/usr/local/lib/python2.7/dist-packages/redis/connection.py", line 538, in send_packed_command self.connect() File "/usr/local/lib/python2.7/dist-packages/redis/connection.py", line 442, in connect raise ConnectionError(self._error_message(e)) ConnectionError: Error 111 connecting to localhost:6379. Connection refused. 127.0.0.1 - - [29/Jul/2019 16:53:05] "GET /runMutalyzerLight?variant=NM_005228.4:c.2296_2297insTGGCCAGCG HTTP/1.1" 500 56

What should I do ?

HEKntg commented 5 years ago

I finally solved it after installing redis-server. Sorry for interrupting you...