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mvdbeek / usegalaxy-tests

Run tests against usegalaxy.org
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Test build_ucsc_custom_track_1 1.0.0 (+ 1.0.1 once updated on org) #19

Closed jennaj closed 2 years ago

jennaj commented 2 years ago

Older tool. Was failing at ORG in January, this is a retest

toolshed.g2.bx.psu.edu/repos/devteam/ucsc_custom_track/build_ucsc_custom_track_1/1.0.0

jennaj commented 2 years ago

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/devteam/ucsc_custom_track/build_ucsc_custom_track_1/1.0.0

mvdbeek commented 2 years ago

Results (powered by Planemo)

Summary

State Count
Total 1
Passed 0
Error 0
Failure 1
Skipped 0
Failed s *
❌ toolshed.g2.bx.psu.edu/repos/devteam/ucsc_custom_track/build_ucsc_custom_track_1 (Test #1)
**Problems**: * ``` Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/devteam/ucsc_custom_track/build_ucsc_custom_track_1/1.0.0, exit_code: 1, stderr: File "/cvmfs/main.galaxyproject.org/migrated_tools/toolshed.g2.bx.psu.edu/repos/devteam/ucsc_custom_track/618e56c3109b/ucsc_custom_track/build_ucsc_custom_track.py", line 94 print "Generated a custom track containing %d subtracks." % num_tracks ^ SyntaxError: Missing parentheses in call to 'print'. Did you mean print("Generated a custom track containing %d subtracks." % num_tracks)? . ``` * ``` Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/devteam/ucsc_custom_track/build_ucsc_custom_track_1/1.0.0, exit_code: 1, stderr: File "/cvmfs/main.galaxyproject.org/migrated_tools/toolshed.g2.bx.psu.edu/repos/devteam/ucsc_custom_track/618e56c3109b/ucsc_custom_track/build_ucsc_custom_track.py", line 94 print "Generated a custom track containing %d subtracks." % num_tracks ^ SyntaxError: Missing parentheses in call to 'print'. Did you mean print("Generated a custom track containing %d subtracks." % num_tracks)? . ``` **Command Line:** * ```console ``` **Exit Code:** * ```console 1 ``` **Standard Error:** * ```console File "/cvmfs/main.galaxyproject.org/migrated_tools/toolshed.g2.bx.psu.edu/repos/devteam/ucsc_custom_track/618e56c3109b/ucsc_custom_track/build_ucsc_custom_track.py", line 94 print "Generated a custom track containing %d subtracks." % num_tracks ^ SyntaxError: Missing parentheses in call to 'print'. Did you mean print("Generated a custom track containing %d subtracks." % num_tracks)? ``` **Job Parameters:** * | Job parameter | Parameter value | | ------------- | --------------- | | tracks | ` [{"__index__": 0, "color": "0-0-0", "description": "User Supplied Track (from Galaxy)", "input": {"values": [{"id": 93291197, "src": "hda"}]}, "name": "User Track", "visibility": "1"}] ` | | chromInfo | ` "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len" ` | | dbkey | ` "?" ` | | \_\_input\_ext | ` "bed" ` |

jennaj commented 2 years ago

Bad print statement 🥇 Thought these older tools are supposed to be running with Py2 (?) Or, could update it to use Py3 syntax. Or, in the case of this particular tool -- maybe get rid of it

fails at EU too: https://usegalaxy.eu/u/jenj/h/test-builducsccustomtrack1

jennaj commented 2 years ago

Status:

mvdbeek commented 2 years ago

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/devteam/ucsc_custom_track/build_ucsc_custom_track_1/1.0.1

mvdbeek commented 2 years ago

Results (powered by Planemo)

Summary

State Count
Total 1
Passed 1
Error 0
Failure 0
Skipped 0
Passed s *
✅ toolshed.g2.bx.psu.edu/repos/devteam/ucsc_custom_track/build_ucsc_custom_track_1 (Test #1)
**Command Line:** * ```console ``` **Exit Code:** * ```console 0 ``` **Standard Output:** * ```console Generated a custom track containing 1 subtracks. ``` **Job Parameters:** * | Job parameter | Parameter value | | ------------- | --------------- | | tracks | ` [{"__index__": 0, "color": "0-0-0", "description": "User Supplied Track (from Galaxy)", "input": {"values": [{"id": 94249859, "src": "hda"}]}, "name": "User Track", "visibility": "1"}] ` | | chromInfo | ` "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len" ` | | dbkey | ` "?" ` | | \_\_input\_ext | ` "input" ` |