mvdbeek / usegalaxy-tests

Run tests against usegalaxy.org
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test dropletutils/1.10.0+galaxy2 #88

Closed jennaj closed 1 year ago

jennaj commented 1 year ago

toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils/1.10.0+galaxy2

jennaj commented 1 year ago

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils/1.10.0+galaxy2

mvdbeek commented 1 year ago

Results (powered by Planemo)

Summary

State Count
Total 6
Passed 6
Error 0
Failure 0
Skipped 0
Passed s *
✅ toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils (Test #1)
**Command Line:** * ```console ``` **Exit Code:** * ```console 0 ``` **Standard Error:** * ```console Error in print.default(ifelse(is.na(y), NA_character_, sQuote(y)), quote = FALSE, : ignoring SIGPIPE signal Calls: -> print.numeric_version -> print -> print.default Execution halted Cells: 1025 ``` **Traceback:** * ```console ``` **Job Parameters:** * | Job parameter | Parameter value | | ------------- | --------------- | | tenx\_format | ` {"__current_case__": 0, "input": {"values": [{"id": 109456188, "src": "hda"}]}, "input_barcodes": {"values": [{"id": 109456213, "src": "hda"}]}, "input_genes": {"values": [{"id": 109456199, "src": "hda"}]}, "use": "directory"} ` | | operation | ` {"__current_case__": 0, "method": {"__current_case__": 0, "expected": "3000", "lowerprop": "0.1", "upperquant": "0.99", "use": "defaultdrops"}, "outformat": "h5", "use": "filter"} ` | | seed | ` "100" ` | | chromInfo | ` "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len" ` | | dbkey | ` "?" ` | | \_\_input\_ext | ` "mtx" ` |
  • ✅ toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils (Test #2)
    **Command Line:** * ```console ``` **Exit Code:** * ```console 0 ``` **Standard Error:** * ```console Error in print.default(ifelse(is.na(y), NA_character_, sQuote(y)), quote = FALSE, : ignoring SIGPIPE signal Calls: -> print.numeric_version -> print -> print.default Execution halted Cells: 1025 ``` **Traceback:** * ```console ``` **Job Parameters:** * | Job parameter | Parameter value | | ------------- | --------------- | | tenx\_format | ` {"__current_case__": 0, "input": {"values": [{"id": 109456188, "src": "hda"}]}, "input_barcodes": {"values": [{"id": 109456213, "src": "hda"}]}, "input_genes": {"values": [{"id": 109456199, "src": "hda"}]}, "use": "directory"} ` | | operation | ` {"__current_case__": 0, "method": {"__current_case__": 0, "expected": "3000", "lowerprop": "0.1", "upperquant": "0.99", "use": "defaultdrops"}, "outformat": "tsv", "use": "filter"} ` | | seed | ` "100" ` | | chromInfo | ` "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len" ` | | dbkey | ` "?" ` | | \_\_input\_ext | ` "mtx" ` |
  • ✅ toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils (Test #3)
    **Command Line:** * ```console ``` **Exit Code:** * ```console 0 ``` **Standard Error:** * ```console Error in print.default(ifelse(is.na(y), NA_character_, sQuote(y)), quote = FALSE, : ignoring SIGPIPE signal Calls: -> print.numeric_version -> print -> print.default Execution halted Warning message: In xy.coords(x, y, xlabel, ylabel, log) : 7432 y values <= 0 omitted from logarithmic plot ``` **Standard Output:** * ```console [1] "knee = 324 , inflection = 151" ``` **Traceback:** * ```console ``` **Job Parameters:** * | Job parameter | Parameter value | | ------------- | --------------- | | tenx\_format | ` {"__current_case__": 0, "input": {"values": [{"id": 109456188, "src": "hda"}]}, "input_barcodes": {"values": [{"id": 109456213, "src": "hda"}]}, "input_genes": {"values": [{"id": 109456199, "src": "hda"}]}, "use": "directory"} ` | | operation | ` {"__current_case__": 1, "lower": "120", "use": "barcode_rank"} ` | | seed | ` "100" ` | | chromInfo | ` "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len" ` | | dbkey | ` "?" ` | | \_\_input\_ext | ` "mtx" ` |
  • ✅ toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils (Test #4)
    **Command Line:** * ```console ``` **Exit Code:** * ```console 0 ``` **Standard Error:** * ```console Error in print.default(ifelse(is.na(y), NA_character_, sQuote(y)), quote = FALSE, : ignoring SIGPIPE signal Calls: -> print.numeric_version -> print -> print.default Execution halted Cells: 998 Cells and Limited: 998 ``` **Standard Output:** * ```console [1] "Cell Library Size Distribution:" Min. 1st Qu. Median Mean 3rd Qu. Max. 0.00 0.00 0.00 46.53 3.00 1153.00 ``` **Traceback:** * ```console ``` **Job Parameters:** * | Job parameter | Parameter value | | ------------- | --------------- | | tenx\_format | ` {"__current_case__": 0, "input": {"values": [{"id": 109456188, "src": "hda"}]}, "input_barcodes": {"values": [{"id": 109456213, "src": "hda"}]}, "input_genes": {"values": [{"id": 109456199, "src": "hda"}]}, "use": "directory"} ` | | operation | ` {"__current_case__": 0, "method": {"__current_case__": 1, "fdr_thresh": "0.02", "lower": "150", "use": "emptydrops"}, "outformat": "h5", "use": "filter"} ` | | seed | ` "100" ` | | chromInfo | ` "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len" ` | | dbkey | ` "?" ` | | \_\_input\_ext | ` "mtx" ` |
  • ✅ toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils (Test #5)
    **Command Line:** * ```console ``` **Exit Code:** * ```console 0 ``` **Standard Error:** * ```console Error in print.default(ifelse(is.na(y), NA_character_, sQuote(y)), quote = FALSE, : ignoring SIGPIPE signal Calls: -> print.numeric_version -> print -> print.default Execution halted Cells: 954 Cells and Limited: 85 ``` **Standard Output:** * ```console [1] "Cell Library Size Distribution:" Min. 1st Qu. Median Mean 3rd Qu. Max. 0.0 8.0 20.0 114.3 46.0 2347.0 ``` **Traceback:** * ```console ``` **Job Parameters:** * | Job parameter | Parameter value | | ------------- | --------------- | | tenx\_format | ` {"__current_case__": 1, "input": {"values": [{"id": 109456180, "src": "hda"}]}, "use": "h5"} ` | | operation | ` {"__current_case__": 0, "method": {"__current_case__": 1, "fdr_thresh": "0.02", "lower": "150", "use": "emptydrops"}, "outformat": "h5", "use": "filter"} ` | | seed | ` "100" ` | | chromInfo | ` "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len" ` | | dbkey | ` "?" ` | | \_\_input\_ext | ` "h5" ` |
  • ✅ toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils (Test #6)
    **Command Line:** * ```console ``` **Exit Code:** * ```console 0 ``` **Standard Error:** * ```console Error in print.default(ifelse(is.na(y), NA_character_, sQuote(y)), quote = FALSE, : ignoring SIGPIPE signal Calls: -> print.numeric_version -> print -> print.default Execution halted Cells: 2650 ``` **Traceback:** * ```console ``` **Job Parameters:** * | Job parameter | Parameter value | | ------------- | --------------- | | tenx\_format | ` {"__current_case__": 2, "input": {"values": [{"id": 109456202, "src": "hda"}]}, "use": "tsv"} ` | | operation | ` {"__current_case__": 0, "method": {"__current_case__": 0, "expected": "2000", "lowerprop": "0.1", "upperquant": "0.85", "use": "defaultdrops"}, "outformat": "directory", "use": "filter"} ` | | seed | ` "100" ` | | chromInfo | ` "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len" ` | | dbkey | ` "?" ` | | \_\_input\_ext | ` "tabular" ` |