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mvdbeek / usegalaxy-tests

Run tests against usegalaxy.org
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test sklearn_estimator_attributes 1.0.8.4 #99

Closed jennaj closed 1 year ago

jennaj commented 1 year ago

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_estimator_attributes/sklearn_estimator_attributes/1.0.8.4

jennaj commented 1 year ago

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_estimator_attributes/sklearn_estimator_attributes/1.0.8.4

mvdbeek commented 1 year ago

Results (powered by Planemo)

Summary

State Count
Total 9
Passed 9
Error 0
Failure 0
Skipped 0
Passed s *
✅ toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_estimator_attributes/sklearn_estimator_attributes (Test #1)
**Command Line:** * ```console ``` **Exit Code:** * ```console 0 ``` **Standard Error:** * ```console /usr/local/lib/python3.6/site-packages/sklearn/externals/joblib/__init__.py:15: DeprecationWarning: sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+. warnings.warn(msg, category=DeprecationWarning) Using TensorFlow backend. ``` **Traceback:** * ```console ``` **Job Parameters:** * | Job parameter | Parameter value | | ------------- | --------------- | | attribute\_type | ` "best_score_" ` | | chromInfo | ` "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len" ` | | dbkey | ` "?" ` | | \_\_input\_ext | ` "input" ` |
  • ✅ toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_estimator_attributes/sklearn_estimator_attributes (Test #2)
    **Command Line:** * ```console ``` **Exit Code:** * ```console 0 ``` **Standard Error:** * ```console /usr/local/lib/python3.6/site-packages/sklearn/externals/joblib/__init__.py:15: DeprecationWarning: sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+. warnings.warn(msg, category=DeprecationWarning) Using TensorFlow backend. ``` **Traceback:** * ```console ``` **Job Parameters:** * | Job parameter | Parameter value | | ------------- | --------------- | | attribute\_type | ` "best_params_" ` | | chromInfo | ` "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len" ` | | dbkey | ` "?" ` | | \_\_input\_ext | ` "input" ` |
  • ✅ toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_estimator_attributes/sklearn_estimator_attributes (Test #3)
    **Command Line:** * ```console ``` **Exit Code:** * ```console 0 ``` **Standard Error:** * ```console /usr/local/lib/python3.6/site-packages/sklearn/externals/joblib/__init__.py:15: DeprecationWarning: sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+. warnings.warn(msg, category=DeprecationWarning) Using TensorFlow backend. ``` **Standard Output:** * ```console Pipeline(memory=None, steps=[('preprocessing_1', SelectKBest(k=10, score_func=)), ('estimator', XGBRegressor(base_score=0.5, booster='gbtree', colsample_bylevel=1, colsample_bytree=1, gamma=0, learning_rate=0.1, max_delta_step=0, max_depth=3, min_child_weight=1, missing=nan, n_estimators=100, n_jobs=1, nthread=None, objective='reg:linear', random_state=10, reg_alpha=0, reg_lambda=1, scale_pos_weight=1, seed=None, silent=True, subsample=1))], verbose=None) ``` **Traceback:** * ```console ``` **Job Parameters:** * | Job parameter | Parameter value | | ------------- | --------------- | | attribute\_type | ` "best_estimator_" ` | | chromInfo | ` "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len" ` | | dbkey | ` "?" ` | | \_\_input\_ext | ` "input" ` |
  • ✅ toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_estimator_attributes/sklearn_estimator_attributes (Test #4)
    **Command Line:** * ```console ``` **Exit Code:** * ```console 0 ``` **Standard Error:** * ```console /usr/local/lib/python3.6/site-packages/sklearn/externals/joblib/__init__.py:15: DeprecationWarning: sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+. warnings.warn(msg, category=DeprecationWarning) Using TensorFlow backend. ``` **Standard Output:** * ```console XGBRegressor(base_score=0.5, booster='gbtree', colsample_bylevel=1, colsample_bytree=1, gamma=0, learning_rate=0.1, max_delta_step=0, max_depth=3, min_child_weight=1, missing=nan, n_estimators=100, n_jobs=1, nthread=None, objective='reg:linear', random_state=10, reg_alpha=0, reg_lambda=1, scale_pos_weight=1, seed=None, silent=True, subsample=1) ``` **Traceback:** * ```console ``` **Job Parameters:** * | Job parameter | Parameter value | | ------------- | --------------- | | attribute\_type | ` "final_estimator" ` | | chromInfo | ` "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len" ` | | dbkey | ` "?" ` | | \_\_input\_ext | ` "input" ` |
  • ✅ toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_estimator_attributes/sklearn_estimator_attributes (Test #5)
    **Command Line:** * ```console ``` **Exit Code:** * ```console 0 ``` **Standard Error:** * ```console /usr/local/lib/python3.6/site-packages/sklearn/externals/joblib/__init__.py:15: DeprecationWarning: sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+. warnings.warn(msg, category=DeprecationWarning) Using TensorFlow backend. ``` **Traceback:** * ```console ``` **Job Parameters:** * | Job parameter | Parameter value | | ------------- | --------------- | | attribute\_type | ` "named_steps" ` | | chromInfo | ` "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len" ` | | dbkey | ` "?" ` | | \_\_input\_ext | ` "input" ` |
  • ✅ toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_estimator_attributes/sklearn_estimator_attributes (Test #6)
    **Command Line:** * ```console ``` **Exit Code:** * ```console 0 ``` **Standard Error:** * ```console /usr/local/lib/python3.6/site-packages/sklearn/externals/joblib/__init__.py:15: DeprecationWarning: sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+. warnings.warn(msg, category=DeprecationWarning) Using TensorFlow backend. ``` **Traceback:** * ```console ``` **Job Parameters:** * | Job parameter | Parameter value | | ------------- | --------------- | | attribute\_type | ` "feature_importances_" ` | | chromInfo | ` "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len" ` | | dbkey | ` "?" ` | | \_\_input\_ext | ` "input" ` |
  • ✅ toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_estimator_attributes/sklearn_estimator_attributes (Test #7)
    **Command Line:** * ```console ``` **Exit Code:** * ```console 0 ``` **Standard Error:** * ```console /usr/local/lib/python3.6/site-packages/sklearn/externals/joblib/__init__.py:15: DeprecationWarning: sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+. warnings.warn(msg, category=DeprecationWarning) Using TensorFlow backend. ``` **Traceback:** * ```console ``` **Job Parameters:** * | Job parameter | Parameter value | | ------------- | --------------- | | attribute\_type | ` "ranking_" ` | | chromInfo | ` "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len" ` | | dbkey | ` "?" ` | | \_\_input\_ext | ` "input" ` |
  • ✅ toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_estimator_attributes/sklearn_estimator_attributes (Test #8)
    **Command Line:** * ```console ``` **Exit Code:** * ```console 0 ``` **Standard Error:** * ```console /usr/local/lib/python3.6/site-packages/sklearn/externals/joblib/__init__.py:15: DeprecationWarning: sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+. warnings.warn(msg, category=DeprecationWarning) Using TensorFlow backend. ``` **Traceback:** * ```console ``` **Job Parameters:** * | Job parameter | Parameter value | | ------------- | --------------- | | attribute\_type | ` "get_params" ` | | chromInfo | ` "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len" ` | | dbkey | ` "?" ` | | \_\_input\_ext | ` "input" ` |
  • ✅ toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_estimator_attributes/sklearn_estimator_attributes (Test #9)
    **Command Line:** * ```console ``` **Exit Code:** * ```console 0 ``` **Standard Error:** * ```console /usr/local/lib/python3.6/site-packages/sklearn/externals/joblib/__init__.py:15: DeprecationWarning: sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+. warnings.warn(msg, category=DeprecationWarning) Using TensorFlow backend. WARNING:tensorflow:From /usr/local/lib/python3.6/site-packages/tensorflow_core/python/ops/resource_variable_ops.py:1630: calling BaseResourceVariable.__init__ (from tensorflow.python.ops.resource_variable_ops) with constraint is deprecated and will be removed in a future version. Instructions for updating: If using Keras pass *_constraint arguments to layers. 2023-06-16 19:30:18.716288: I tensorflow/core/platform/cpu_feature_guard.cc:145] This TensorFlow binary is optimized with Intel(R) MKL-DNN to use the following CPU instructions in performance critical operations: SSE4.1 SSE4.2 AVX To enable them in non-MKL-DNN operations, rebuild TensorFlow with the appropriate compiler flags. 2023-06-16 19:30:18.807991: I tensorflow/core/platform/profile_utils/cpu_utils.cc:94] CPU Frequency: 2199990000 Hz 2023-06-16 19:30:18.808181: I tensorflow/compiler/xla/service/service.cc:168] XLA service 0x562510333a40 initialized for platform Host (this does not guarantee that XLA will be used). Devices: 2023-06-16 19:30:18.808208: I tensorflow/compiler/xla/service/service.cc:176] StreamExecutor device (0): Host, Default Version OMP: Info #212: KMP_AFFINITY: decoding x2APIC ids. OMP: Info #210: KMP_AFFINITY: Affinity capable, using global cpuid leaf 11 info OMP: Info #154: KMP_AFFINITY: Initial OS proc set respected: 20 OMP: Info #156: KMP_AFFINITY: 1 available OS procs OMP: Info #157: KMP_AFFINITY: Uniform topology OMP: Info #159: KMP_AFFINITY: 1 packages x 1 cores/pkg x 1 threads/core (1 total cores) OMP: Info #214: KMP_AFFINITY: OS proc to physical thread map: OMP: Info #171: KMP_AFFINITY: OS proc 20 maps to package 0 OMP: Info #250: KMP_AFFINITY: pid 18133 tid 18133 thread 0 bound to OS proc set 20 2023-06-16 19:30:18.809743: I tensorflow/core/common_runtime/process_util.cc:115] Creating new thread pool with default inter op setting: 2. Tune using inter_op_parallelism_threads for best performance. WARNING:tensorflow:From /usr/local/lib/python3.6/site-packages/keras/backend/tensorflow_backend.py:422: The name tf.global_variables is deprecated. Please use tf.compat.v1.global_variables instead. ``` **Traceback:** * ```console ``` **Job Parameters:** * | Job parameter | Parameter value | | ------------- | --------------- | | attribute\_type | ` "save_weights" ` | | chromInfo | ` "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len" ` | | dbkey | ` "?" ` | | \_\_input\_ext | ` "input" ` |