Note that the ISA-API also has a function to pull metadata from mzml files referenced from an ISA document to "enrich" it and bubble up information contained in 'raw' data files.
Do not hesitate to get in touch (isatools [at] googlegroups.com or with directly to me) if you have any question regarding ISA, feature requests, extension or if you'd like to contribute to the project.
@veitveit @mwalzer
following up on my initial input, I am pointed you to several links:
ISA-API github repo: https://github.com/ISA-tools/isa-api
ISA-API documentation: https://isatools.readthedocs.io/en/latest/index.html
ISA galaxy tool: https://github.com/ISA-tools/isatools-galaxy
Note that ISA is an official Galaxy Data type.
PhenoMeNal Galaxy tool: https://publicdev.phenomenal-h2020.eu/?tool_id=isacreate_metabo&version=1.2.0&__identifer=1p9j2w3iqtr
mzml2ISA: given a bag of mzml files, one can boostrap the creation of an ISA metadata file backbone. https://github.com/ISA-tools/mzml2isa
Note that the ISA-API also has a function to pull metadata from mzml files referenced from an ISA document to "enrich" it and bubble up information contained in 'raw' data files.
ISA configurations: https://github.com/ISA-tools/Configuration-Files/tree/master
ISA-Tab viewer: https://github.com/ISA-tools/ISATab-Viewer a thin layer to render ISA-Tab document in html, used in the corresponding Galaxy viewer plugin
Scientific Data Explorer: Used by Nature Publishing Group's Scientific Data http://scientificdata.isa-explorer.org/
Do not hesitate to get in touch (isatools [at] googlegroups.com or with directly to me) if you have any question regarding ISA, feature requests, extension or if you'd like to contribute to the project.