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Use CVParams structure from mzML in analysisXML #2

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
Decided at Toledo to not use the FuGE CV params structure, but the same
structure as in mzML. Needs to be incorporated into the xsd

Original issue reported on code.google.com by dcre...@gmail.com on 28 Apr 2008 at 11:26

GoogleCodeExporter commented 9 years ago 
Andy has moved the mzML cvParam model to the schema.  Issue that in mzML you can
either have cv in line, or cv referenced.  For the moment, Andy suggests keep 
them
in-line, and then follow mzML if they come up with a better solution.  Issue to 
be
moved to Andy

Original comment by dcre...@gmail.com on 13 May 2008 at 1:13

GoogleCodeExporter commented 9 years ago 
From andy's email: 6th June 2008:

One minor problem. On the call we discussed using XSD style inheritance for 
cvParam,
where an entity e.g. SearchType uses the cvParamType complexType. 
Unfortunately, this
does not work with also using the other style of inheritance where you can give 
the
option of a userParam or cvParam by giving a reference to an abstract 
superclass e.g.
ParamType. 

So... we either go back to the old style of having e.g.

<SearchType>
    <cvParam ...>

Or we ditch the option of having cvParam or userParam as an option, and only 
user
cvParam. We could for example make cvRef and accession optional, so a userParam 
is
just a cvParam without the reference. I can give examples if I haven't 
explained this
clearly enough.

Original comment by dcre...@gmail.com on 11 Jun 2008 at 5:35

GoogleCodeExporter commented 9 years ago 
Cannot subclass both userParam and cvParam in the same element, so need to find
places where cvParams are mandated - these are the only places where 
subclassing can
be used.

Original comment by eisena...@googlemail.com on 17 Jun 2008 at 11:41

GoogleCodeExporter commented 9 years ago 
[deleted comment]
GoogleCodeExporter commented 9 years ago 
changed ModName deriving not from PropertyValueType, but from cvParamType;
others seem to be okay.

Original comment by eisena...@googlemail.com on 10 Jul 2008 at 4:12

GoogleCodeExporter commented 9 years ago 
documented the 4 types of Params/Values on wiki page.

Original comment by eisena...@googlemail.com on 14 Jul 2008 at 11:19

GoogleCodeExporter commented 9 years ago

Original comment by eisena...@googlemail.com on 15 Jul 2008 at 1:33