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mwaskom
/
lyman
Data pipelines and analysis library for functional MRI
http://www.cns.nyu.edu/~mwaskom/software/lyman
BSD 3-Clause "New" or "Revised" License
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Fix issues with volume segmentation
#198
mwaskom
closed
4 years ago
0
Adapt to changes in nipype
#197
mwaskom
closed
4 years ago
1
Adapt to changes in nibabel
#196
mwaskom
closed
4 years ago
0
Seperate out distortion estimation and cache results
#195
mwaskom
opened
4 years ago
0
Allow Mosaic stat_img to have integer dtype
#194
mwaskom
closed
5 years ago
1
Restrict vol_to_surf resampling to Freesurfer cortex
#193
mwaskom
closed
5 years ago
0
Improve and enhance HRF basis model
#192
mwaskom
closed
5 years ago
1
Add non-underscore suffix connector to FIR basis
#191
mwaskom
closed
5 years ago
1
Add API documentation
#190
mwaskom
closed
5 years ago
1
Nuisance regressors could get a second round of dimensionality reduction
#189
mwaskom
opened
5 years ago
2
Develop nuisance components of linear model
#188
mwaskom
closed
5 years ago
1
Add mask of brain 'edge' voxels in functional space
#187
mwaskom
closed
5 years ago
1
Small fixes
#186
mwaskom
closed
5 years ago
1
Add option to write time series qc movies as mp4
#185
mwaskom
opened
5 years ago
1
Nodes that use convert binary consume > 100% CPU
#184
mwaskom
closed
5 years ago
0
Write out a cortical ribbon mask in the template/segmentation
#183
mwaskom
closed
5 years ago
1
Rename anatomical "template" workflow/outputs to "segment"
#182
mwaskom
opened
5 years ago
0
Condition names that parse to numerics break in model specification
#181
mwaskom
closed
5 years ago
0
Make it easier to have a single default model
#180
mwaskom
opened
5 years ago
0
FD line plot in carpet plot does not adapt upper y limit to large movements
#179
mwaskom
closed
5 years ago
1
Fix HRF convolution
#178
mwaskom
closed
5 years ago
0
Add API documentation
#177
mwaskom
closed
4 years ago
0
Add confound identification/removal
#176
mwaskom
opened
5 years ago
1
Small improvements throughout
#175
mwaskom
closed
5 years ago
1
Change order of processing in fit model to fail earlier with bad design
#174
mwaskom
closed
5 years ago
1
(Optionally) save session-wise results
#173
mwaskom
opened
5 years ago
0
session-wise preproc gets repeated when each session has multiple experiments
#172
mwaskom
opened
5 years ago
2
Fix bug in design matrix resampling
#171
mwaskom
closed
5 years ago
0
image_to_matrix docstring is incorrect
#170
mwaskom
closed
5 years ago
0
Add FIR model basis set as HRF
#169
mwaskom
closed
6 years ago
0
Incorporate FIR model in to workflows
#168
mwaskom
closed
5 years ago
1
Small compatibility fixes
#167
mwaskom
closed
6 years ago
1
Future warnings about numpy indexing changes
#166
mwaskom
closed
5 years ago
1
Move GammaHRF to GammaBasisHRF, add single-variate version
#165
mwaskom
closed
4 years ago
1
data_dictionary definition unclear that lyman requires the output of freesurfer recon-all
#164
sguthrie
closed
6 years ago
1
Add docs for previous releases
#163
kastman
closed
6 years ago
5
Declare dependency on nipype 0.14 and get with conda on travis
#162
mwaskom
closed
6 years ago
1
Add set_subjects_dir method
#161
mwaskom
opened
6 years ago
0
Switch to using MPLBACKEND for testing
#160
mwaskom
closed
5 years ago
1
Assume design files have experiment name prepended
#159
mwaskom
closed
6 years ago
1
API inconsistencies
#158
mwaskom
opened
6 years ago
0
Better error from workflows when LYMAN_DIR is not defined
#157
mwaskom
opened
6 years ago
0
Add results interface objects
#156
mwaskom
opened
6 years ago
0
Improve surface smoothing and other surface operations
#155
mwaskom
closed
6 years ago
1
Support for input datasets formatted according to BIDS
#154
chrisgorgo
closed
6 years ago
2
Ensure that surface voxels are considered cortical gray matter in segmentation
#153
mwaskom
closed
6 years ago
1
Anatomical processing planning
#152
mwaskom
opened
6 years ago
0
seg and surf files do not agree about what is cortex
#151
mwaskom
closed
6 years ago
0
Handle some TODOs in the model workflow
#150
mwaskom
closed
6 years ago
1
Fix handling of missing contrasts in model results
#149
mwaskom
closed
6 years ago
2
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