CLI for common batch tasks - Githubissues

mwinokan / HIPPO

Hit Interaction Profiling for Procurement Optimisation

https://hippo.winokan.com

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CLI for common batch tasks #141

Open mwinokan opened 1 month ago

mwinokan commented 1 month ago

[ ] Create batch.py (Run with python -m hippo.batch COMMAND)
[ ] add_hits wrapper (creates animal / DB)
[ ] add_hits documentation
[ ] add_bases wrapper (using syndirella master CSV)
[ ] add_bases documentation
[ ] add_elabs wrapper (using syndirella to_hippo pickles)
[ ] add_elabs documentation
[ ] add_quotes wrapper (using EnamineCatalogs DB)
[ ] add_quotes documentation
[ ] solve_routes command w/ batching
[ ] solve_routes documentation
[ ] pipeline command
[ ] pipeline documentation
[ ] documentation on SLURM submission
[ ] integration with BulkDock?