Assistance Request: Help installing.

[mf0hka]

I was glad to see this project migrated to github! I am having some difficulties installing. http://pastebin.com/77CD60FM it says mysql isn't isntalled... thats not right, but, I am using mariaDB front end, perhaps there is an issue there? it says pkgconfig isn't up to date. I have version 0.26 which is the stable for my Ubuntu 14.04

-- WARNING: you are using the obsolete 'PKGCONFIG' macro, use FindPkgConfig -- PKGCONFIG() indicates that openbabel-2.0 is not installed (install the package which contains openbabel-2.0.pc if you want to support this feature)

I do want to use openbabel. I tried looking at cmake FindPkgConfig but I failed to understand how to use it. Can you provide an example of how i might use this tool to install mychem?

openbabel version 2.3.0 is installed. Im going to paw through source code now, but assistance would be greatly appreciated!

[Pansanel]

The project has not been tested with MariaDB, but it is in my roadmap to support this DBMS. Regarding your issue, are the following packages installed:

• libmysqlclient-dev
• libopenbabel-dev

[leonqli]

Any suggestion about the following errors? Thanks in advance!

$make test Running tests... Test project /home/leonqli/tools/mychem/mychem-code/build Start 1: ConversionTest 1/5 Test #1: ConversionTest ...................*Failed 0.01 sec Start 2: HelperTest 2/5 The following tests FAILED: 1 - ConversionTest (Failed) 2 - HelperTest (Failed) 3 - ModificationTest (Failed) 4 - MolmatchTest (Failed) 5 - PropertyTest (Failed) Errors while running CTest make: * [test] Error 8 Test #2: HelperTest ......................._Failed 0.00 sec Start 3: ModificationTest 3/5 Test #3: ModificationTest ................._Failed 0.00 sec Start 4: MolmatchTest 4/5 Test #4: MolmatchTest ....................._Failed 0.00 sec Start 5: PropertyTest 5/5 Test #5: PropertyTest ....................._Failed 0.00 sec

0% tests passed, 5 tests failed out of 5

Total Test time (real) = 0.03 sec

The following tests FAILED: 1 - ConversionTest (Failed) 2 - HelperTest (Failed) 3 - ModificationTest (Failed) 4 - MolmatchTest (Failed) 5 - PropertyTest (Failed) Errors while running CTest make: *\ [test] Error 8

[fredrikw]

What were your commands before running the test? Specifically, did you install the functions into mysql by running the mysql -u user -p < src/mysqldb.sql command?

[leonqli]

yes. I did. I change another computer and got the following test results: Test project /raid/tools/mychem/mychem-code-master/build Start 1: ConversionTest 1/5 Test #1: ConversionTest ..................._Failed 0.05 sec Start 2: HelperTest 2/5 Test #2: HelperTest ....................... Passed 0.00 sec Start 3: ModificationTest 3/5 Test #3: ModificationTest ................._Failed 0.02 sec Start 4: MolmatchTest 4/5 Test #4: MolmatchTest ....................._Exception: SegFault 0.12 sec Start 5: PropertyTest 5/5 Test #5: PropertyTest ....................._Failed 0.06 sec

20% tests passed, 4 tests failed out of 5

Total Test time (real) = 0.26 sec

The following tests FAILED: 1 - ConversionTest (Failed) 3 - ModificationTest (Failed) 4 - MolmatchTest (SEGFAULT) 5 - PropertyTest (Failed) Errors while running CTest make: *\ [test] Error 8

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This is my cmake output file:

cmake: /opt/UCSF/Chimera64-1.10.2/lib/libssl.so.1.0.0: no version information available (required by /usr/lib/x86_64-linux-gnu/libcurl.so.4) cmake: /opt/UCSF/Chimera64-1.10.2/lib/libssl.so.1.0.0: no version information available (required by /usr/lib/x86_64-linux-gnu/libcurl.so.4) cmake: /opt/UCSF/Chimera64-1.10.2/lib/libcrypto.so.1.0.0: no version information available (required by /usr/lib/x86_64-linux-gnu/libcurl.so.4) -- The C compiler identification is GNU 4.8.4 -- The CXX compiler identification is GNU 4.8.4 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- The build type is RelWithDebInfo -- Test module enabled -- Found PkgConfig: /usr/bin/pkg-config (found version "0.26") -- WARNING: you are using the obsolete 'PKGCONFIG' macro, use FindPkgConfig -- OPENBABEL_MINI_FOUND -- Found OpenBabel2: /usr/local/lib/libopenbabel.so -- Open Babel Exe: /usr/local/bin/babel -- Using mysql-config: /usr/bin/mysql_config -- MySQL Version: 5.5.47 -- MySQL Plugin Dir: /usr/lib/mysql/plugin -- Found MySQL 5.5.47: /usr/include/mysql, /usr/lib/x86_64-linux-gnu/libmysqlclient.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so -- Mychem installation directory: /usr/lib/mysql/plugin -- Looking for stdlib.h -- Looking for stdlib.h - found -- Looking for stdio.h -- Looking for stdio.h - found -- Looking for string.h -- Looking for string.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Defining dlhandler source files -- Configuring done -- Generating done -- Build files have been written to: /raid/tools/mychem/mychem-code-master/build

[Pansanel]

Which OS are you using? Can you post the content of the build/Testing/Temporary/LastTest.log after removing the password?

[Pansanel]

No answer. I close the issue.