Closed mf0hka closed 6 years ago
The project has not been tested with MariaDB, but it is in my roadmap to support this DBMS. Regarding your issue, are the following packages installed:
Any suggestion about the following errors? Thanks in advance!
$make test Running tests... Test project /home/leonqli/tools/mychem/mychem-code/build Start 1: ConversionTest 1/5 Test #1: ConversionTest ...................*Failed 0.01 sec Start 2: HelperTest 2/5 The following tests FAILED: 1 - ConversionTest (Failed) 2 - HelperTest (Failed) 3 - ModificationTest (Failed) 4 - MolmatchTest (Failed) 5 - PropertyTest (Failed) Errors while running CTest make: * [test] Error 8 Test #2: HelperTest ......................._Failed 0.00 sec Start 3: ModificationTest 3/5 Test #3: ModificationTest ................._Failed 0.00 sec Start 4: MolmatchTest 4/5 Test #4: MolmatchTest ....................._Failed 0.00 sec Start 5: PropertyTest 5/5 Test #5: PropertyTest ....................._Failed 0.00 sec
0% tests passed, 5 tests failed out of 5
Total Test time (real) = 0.03 sec
The following tests FAILED: 1 - ConversionTest (Failed) 2 - HelperTest (Failed) 3 - ModificationTest (Failed) 4 - MolmatchTest (Failed) 5 - PropertyTest (Failed) Errors while running CTest make: *\ [test] Error 8
What were your commands before running the test? Specifically, did you install the functions into mysql by running the mysql -u user -p < src/mysqldb.sql
command?
yes. I did. I change another computer and got the following test results: Test project /raid/tools/mychem/mychem-code-master/build Start 1: ConversionTest 1/5 Test #1: ConversionTest ..................._Failed 0.05 sec Start 2: HelperTest 2/5 Test #2: HelperTest ....................... Passed 0.00 sec Start 3: ModificationTest 3/5 Test #3: ModificationTest ................._Failed 0.02 sec Start 4: MolmatchTest 4/5 Test #4: MolmatchTest ....................._Exception: SegFault 0.12 sec Start 5: PropertyTest 5/5 Test #5: PropertyTest ....................._Failed 0.06 sec
20% tests passed, 4 tests failed out of 5
Total Test time (real) = 0.26 sec
The following tests FAILED: 1 - ConversionTest (Failed) 3 - ModificationTest (Failed) 4 - MolmatchTest (SEGFAULT) 5 - PropertyTest (Failed) Errors while running CTest make: *\ [test] Error 8
This is my cmake output file:
cmake: /opt/UCSF/Chimera64-1.10.2/lib/libssl.so.1.0.0: no version information available (required by /usr/lib/x86_64-linux-gnu/libcurl.so.4)
cmake: /opt/UCSF/Chimera64-1.10.2/lib/libssl.so.1.0.0: no version information available (required by /usr/lib/x86_64-linux-gnu/libcurl.so.4)
cmake: /opt/UCSF/Chimera64-1.10.2/lib/libcrypto.so.1.0.0: no version information available (required by /usr/lib/x86_64-linux-gnu/libcurl.so.4)
-- The C compiler identification is GNU 4.8.4
-- The CXX compiler identification is GNU 4.8.4
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- The build type is RelWithDebInfo
-- Test module enabled
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.26")
-- WARNING: you are using the obsolete 'PKGCONFIG' macro, use FindPkgConfig
-- OPENBABEL_MINI_FOUND
Which OS are you using?
Can you post the content of the build/Testing/Temporary/LastTest.log
after removing the password?
No answer. I close the issue.
I was glad to see this project migrated to github! I am having some difficulties installing. http://pastebin.com/77CD60FM it says mysql isn't isntalled... thats not right, but, I am using mariaDB front end, perhaps there is an issue there? it says pkgconfig isn't up to date. I have version 0.26 which is the stable for my Ubuntu 14.04
-- WARNING: you are using the obsolete 'PKGCONFIG' macro, use FindPkgConfig -- PKGCONFIG() indicates that openbabel-2.0 is not installed (install the package which contains openbabel-2.0.pc if you want to support this feature)
I do want to use openbabel. I tried looking at cmake FindPkgConfig but I failed to understand how to use it. Can you provide an example of how i might use this tool to install mychem?
openbabel version 2.3.0 is installed. Im going to paw through source code now, but assistance would be greatly appreciated!