Test all global params per module - Githubissues

mycobactopia-org / MTBseq-nf

MTBSeq made simple and easy using Nextflow and nf-core standard.

https://doi.org/10.5281/zenodo.5498063

MIT License

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Test all global params per module #31

Closed abhi18av closed 2 years ago

abhi18av commented 3 years ago

We need to make sure that we accomodate the global_parameters mentioned here https://github.com/mtb-bioinformatics/mtbseq-nf/blob/59f7650f521b95cba59774aaac1a165515c11c47/conf/global_params.config#L140

[x] We can add the reference files to this repo itself - and substitute the docker/conda-based hardcoded paths in the global_config

https://github.com/ngs-fzb/MTBseq_source/tree/master/var

[x] Create a channel for these references
[x] Accomodate all the base modules for these references