Open abhi18av opened 2 years ago
Note:
The docker image contains the following references
$ docker run -it --rm quay.io/biocontainers/mtbseq:1.0.3--pl526_1
/ # ls /usr/local/share/mtbseq-1.0.3-1/var/ref/ -lah
total 30568
drwxr-xr-x 2 root root 4.0K Oct 4 2018 .
drwxr-xr-x 5 root root 4.0K Oct 4 2018 ..
-rw-rw-r-- 1 root root 4.8M Oct 4 2018 M._abscessus_CIP-104536T_2014-02-03.fasta
-rw-rw-r-- 1 root root 475.1K Oct 4 2018 M._abscessus_CIP-104536T_2014-02-03_genes.txt
-rw-rw-r-- 1 root root 5.6M Oct 4 2018 M._chimaera_DSM44623_2016-01-28.fasta
-rw-rw-r-- 1 root root 546.5K Oct 4 2018 M._chimaera_DSM44623_2016-01-28_genes.txt
-rw-rw-r-- 1 root root 6.0M Oct 4 2018 M._fortuitum_CT6_2016-01-08.fasta
-rw-rw-r-- 1 root root 512.2K Oct 4 2018 M._fortuitum_CT6_2016-01-08_genes.txt
-rw-rw-r-- 1 root root 203 Oct 4 2018 M._tuberculosis_H37Rv_2015-11-13.dict
-rw-rw-r-- 1 root root 4.2M Oct 4 2018 M._tuberculosis_H37Rv_2015-11-13.fasta
-rw-rw-r-- 1 root root 12 Oct 4 2018 M._tuberculosis_H37Rv_2015-11-13.fasta.amb
-rw-rw-r-- 1 root root 60 Oct 4 2018 M._tuberculosis_H37Rv_2015-11-13.fasta.ann
-rw-rw-r-- 1 root root 4.2M Oct 4 2018 M._tuberculosis_H37Rv_2015-11-13.fasta.bwt
-rw-rw-r-- 1 root root 48 Oct 4 2018 M._tuberculosis_H37Rv_2015-11-13.fasta.fai
-rw-rw-r-- 1 root root 1.1M Oct 4 2018 M._tuberculosis_H37Rv_2015-11-13.fasta.pac
-rw-rw-r-- 1 root root 2.1M Oct 4 2018 M._tuberculosis_H37Rv_2015-11-13.fasta.sa
-rw-rw-r-- 1 root root 344.7K Oct 4 2018 M._tuberculosis_H37Rv_2015-11-13_genes.txt
Partially done with #43
I've initied the repo here https://github.com/mtb-bioinformatics/mtb-boinformatics.github.io
I've added a brief section for brief section for usage instruction.
https://github.com/mtb-bioinformatics/mtbseq-nf#usage
But it might be worth to think about a docusaurus website for
mtb-bioinformatics
and then showcase the options formtbseq-nf