Consider creating a custom container with all the necessary deps.

mycobactopia-org / MTBseq-nf

MTBSeq made simple and easy using Nextflow and nf-core standard.

https://doi.org/10.5281/zenodo.5498063

MIT License

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Consider creating a custom container with all the necessary deps. #67

Closed abhi18av closed 1 year ago

abhi18av commented 2 years ago

I'm thinking that now we can publish a custom docker container starting from micromamba image after this - containing the fastqc and multiqc deps as well 🤔

Originally posted by @abhi18av in https://github.com/mtb-bioinformatics/mtbseq-nf/pull/64#pullrequestreview-951010173

NOTE: This task should only be initiated if the custom multi-container (mulled) request doesn't work out. Refer here https://github.com/mtb-bioinformatics/mtbseq-nf/issues/60

Mxrcon commented 2 years ago

@abhi18av, Seems like a very good option! this way we can optimize the runs when using cloud computing!