Closed abhi18av closed 1 year ago
@abhi18av on my latest commits I tried to standardize the overall deployment of containers and conda environment as well. On conda
step I added a step to register the GATK jar and check MTBseq installation.
I think that the overall goals of this Pull request will be addressed by this, so I'm Kindly requesting for a review.
I published the image here: https://github.com/orgs/mtb-bioinformatics/packages/container/package/mtbseq-nf, It's published as a mtb-bioinformatics
package instead of mtbseq-nf
package image, as It may be complex to explain that this image is required to run mtbseq-nf but isn't the mtbseq-nf tool containerized.
Merging this PR after local testing
Hey there :wave:
This Pull-request address important enhancements focusing on better usability and easier user interaction.
Main changes: