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mycobactopia-org / MTBseq-nf

MTBSeq made simple and easy using Nextflow and nf-core standard.
https://doi.org/10.5281/zenodo.5498063
MIT License
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Single-end reads #81

Closed AroobAlhumaidy closed 1 year ago

AroobAlhumaidy commented 1 year ago

Hello,

Dose the pipeline works on single-end reads?

Thanks

Best, Aroob

abhi18av commented 1 year ago

Hi @AroobAlhumaidy ,

Thanks for your interest in the wrapper!

Yes the single end reads are accommodated as a direct consequence of using MTBseq https://github.com/ngs-fzb/MTBseq_source/blob/master/MANUAL.md#overview