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mycobactopia-org / MTBseq-nf

MTBSeq made simple and easy using Nextflow and nf-core standard.
https://doi.org/10.5281/zenodo.5498063
MIT License
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Use nf-core template for the pipeline to facilitate standardisation #84

Closed abhi18av closed 5 months ago

abhi18av commented 9 months ago

With the immense momentum behind nf-core pipeline and module ecosystem, it is worth moving from our own custom template to a more standardized approach.

This PR marks this transition to the template.

Mxrcon commented 9 months ago

Hey @abhi18av, now that we standardized the pipeline into nf-core template inside the nf-core-mtbseq folder, is it time to merge from the folder to outside? so we only work on one version now? perhaps testing with some files

abhi18av commented 9 months ago

Thanks for making the push on this template transition - taking a look at this now Davi!

Mxrcon commented 5 months ago

@abhi18av the modules are at nf-core standardzation, but we need to stabilish the mtbseq-nf main workflow, converting it from the old version to the new.

abhi18av commented 5 months ago

Thank you so much for your dedication and push on this PR @Mxrcon ! 🎉 💚