myles-lewis glmmSeq issues

myles-lewis / glmmSeq

Gene-level general linear mixed model

https://myles-lewis.github.io/glmmSeq/

Other

18 stars 10 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Application for metagenomics data ???

#39 OrsonMM opened 2 months ago
0
Order of x1values argument in fcPlot() and maPlot() only switches axis label, does not alter y-axis values

#38 sgaluh opened 4 months ago
0
Output summary

#37 CarrieMeeks opened 7 months ago
0
do I need to add age into the model?

#36 ChuanJ closed 4 months ago
2
maPlot function has the same name as the one in the 'edge' package

#35 elisabettasciacca opened 1 year ago
0
Dispersion memory issue

#34 JHYSiu closed 1 year ago
0
Update fcPlot.R

#33 elisabettasciacca opened 1 year ago
0
GSEA Support

#32 nijibabulu opened 1 year ago
0
vector memory exhausted issue

#31 leqi0001 opened 1 year ago
1
Can glmmseq be used in non-longitudinal data?

#30 Leran10 closed 4 months ago
1
Add LRT option

#29 myles-lewis closed 2 years ago
0
Update documentation

#28 myles-lewis closed 2 years ago
0
Add glmmTMB

#27 myles-lewis closed 2 years ago
0
Speed up lmmSeq

#26 myles-lewis closed 2 years ago
0
Improve stats output

#25 myles-lewis closed 2 years ago
0
sizeFactors instructions in vignette

#24 zktuong closed 2 years ago
1
Fast lmer wald test

#23 myles-lewis closed 2 years ago
0
lmmSeq

#22 myles-lewis closed 2 years ago
0
Add '...' to fcPlot

#21 elisabettasciacca closed 2 years ago
1
Using TPM normalised vs raw count expression data

#20 RikLindeboom closed 2 years ago
1
About turing off annotationPosition

#19 elisabettasciacca closed 2 years ago
2
pairedPlot error using GlmmSeq object with covariates

#18 kew24 closed 2 years ago
4
Specify design matrix

#17 zktuong closed 2 years ago
1
inverting log2 subtraction for FCplot

#16 elisabettasciacca closed 2 years ago
0
Adjust ylim when plotting the model

#15 elisabettasciacca closed 3 years ago
0
Allow users to input their own family in lme4::glmer()

#14 KatrionaGoldmann closed 2 years ago
3
plotCutoff parameter in fcPlot

#13 elisabettasciacca closed 3 years ago
1
colors in base plot

#12 elisabettasciacca closed 3 years ago
1
Eli 2

#11 elisabettasciacca closed 3 years ago
1
Update pairedPlots.R

#10 elisabettasciacca closed 3 years ago
1
fontSize option does not work

#9 elisabettasciacca closed 3 years ago
1
mention size factors in the vignette

#8 elisabettasciacca closed 3 years ago
3
Add progress bar

#7 KatrionaGoldmann closed 3 years ago
1
Update glmmSeq.R

#6 elisabettasciacca closed 3 years ago
0
add zeroCount to offset the zero in the count data with log scaled

#5 KatrionaGoldmann closed 3 years ago
0
Create modelPlot function

#4 KatrionaGoldmann closed 4 years ago
1
Create glmmGene function to run model on one gene alone and return fit

#3 KatrionaGoldmann closed 4 years ago
0
add a glmmSeq function which doesnt use glmer but glm (without the random effects)

#1 KatrionaGoldmann closed 2 years ago
1