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myles-lewis
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glmmSeq
Gene-level general linear mixed model
https://myles-lewis.github.io/glmmSeq/
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Order of x1values argument in fcPlot() and maPlot() only switches axis label, does not alter y-axis values
#38
sgaluh
opened
1 month ago
0
Output summary
#37
CarrieMeeks
opened
4 months ago
0
do I need to add age into the model?
#36
ChuanJ
closed
1 month ago
2
maPlot function has the same name as the one in the 'edge' package
#35
elisabettasciacca
opened
10 months ago
0
Dispersion memory issue
#34
JHYSiu
closed
9 months ago
0
Update fcPlot.R
#33
elisabettasciacca
opened
1 year ago
0
GSEA Support
#32
nijibabulu
opened
1 year ago
0
vector memory exhausted issue
#31
leqi0001
opened
1 year ago
1
Can glmmseq be used in non-longitudinal data?
#30
Leran10
closed
1 month ago
1
Add LRT option
#29
myles-lewis
closed
1 year ago
0
Update documentation
#28
myles-lewis
closed
2 years ago
0
Add glmmTMB
#27
myles-lewis
closed
2 years ago
0
Speed up lmmSeq
#26
myles-lewis
closed
2 years ago
0
Improve stats output
#25
myles-lewis
closed
2 years ago
0
sizeFactors instructions in vignette
#24
zktuong
closed
2 years ago
1
Fast lmer wald test
#23
myles-lewis
closed
2 years ago
0
lmmSeq
#22
myles-lewis
closed
2 years ago
0
Add '...' to fcPlot
#21
elisabettasciacca
closed
2 years ago
1
Using TPM normalised vs raw count expression data
#20
RikLindeboom
closed
2 years ago
1
About turing off annotationPosition
#19
elisabettasciacca
closed
2 years ago
2
pairedPlot error using GlmmSeq object with covariates
#18
kew24
closed
1 year ago
4
Specify design matrix
#17
zktuong
closed
2 years ago
1
inverting log2 subtraction for FCplot
#16
elisabettasciacca
closed
2 years ago
0
Adjust ylim when plotting the model
#15
elisabettasciacca
closed
3 years ago
0
Allow users to input their own family in lme4::glmer()
#14
KatrionaGoldmann
closed
2 years ago
3
plotCutoff parameter in fcPlot
#13
elisabettasciacca
closed
3 years ago
1
colors in base plot
#12
elisabettasciacca
closed
3 years ago
1
Eli 2
#11
elisabettasciacca
closed
3 years ago
1
Update pairedPlots.R
#10
elisabettasciacca
closed
3 years ago
1
fontSize option does not work
#9
elisabettasciacca
closed
3 years ago
1
mention size factors in the vignette
#8
elisabettasciacca
closed
3 years ago
3
Add progress bar
#7
KatrionaGoldmann
closed
3 years ago
1
Update glmmSeq.R
#6
elisabettasciacca
closed
3 years ago
0
add zeroCount to offset the zero in the count data with log scaled
#5
KatrionaGoldmann
closed
3 years ago
0
Create modelPlot function
#4
KatrionaGoldmann
closed
4 years ago
1
Create glmmGene function to run model on one gene alone and return fit
#3
KatrionaGoldmann
closed
4 years ago
0
add a glmmSeq function which doesnt use glmer but glm (without the random effects)
#1
KatrionaGoldmann
closed
2 years ago
1