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myousif9 / hippograd

GNU General Public License v3.0
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simplify hippocampal warping #1

Closed jordandekraker closed 2 years ago

jordandekraker commented 2 years ago

https://github.com/myousif9/hippograd/blob/cd29d0777ac0d563b3ac54cd249c0ba6130dcfd0/hippograd/workflow/rules/post_hippunfold.smk#L21

consider using https://www.humanconnectome.org/software/workbench-command/-surface-apply-warpfield

myousif9 commented 2 years ago

I ended up retaining the previous method of transforming the surfaces since wb_command -surface-apply-warpfield requires the transform to be in a nifti format when fMRIPrep provides in and .h5 file. So far I haven't found a simpler way to convert the transform to a nifti file

jordandekraker commented 2 years ago

Seems like a good solution