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mz2 / peer

A factor analysis package
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error while installing peer #15

Open ghost opened 3 years ago

ghost commented 3 years ago

Hello, I tried to use command cmake ./.. But its giving error. The error: File "", line 1 from distutils import sysconfig; print sysconfig.get_python_lib() ^ SyntaxError: invalid syntax CMake Error at python/CMakeLists.txt:49 (if): if given arguments:

"(" "NOT" "EXISTS" "File \"<string>\", line 1
  from distutils import sysconfig" " print sysconfig.get_python_inc()
                                         ^

SyntaxError: invalid syntax" ")"

Unknown arguments specified

-- Configuring incomplete, errors occurred!

Can anyone please help me out with this? Thank you

lp2 commented 3 years ago

Hello,

thank you for the report. Ricard (cc-d) has folded PEER into the multi-omics factor analysis (MOFA) framework as described below - we recommend using this going forward, as it is properly supported, and it may resolve your issues.

Leo

From Ricard:

Running MOFA (https://github.com/bioFAM/MOFA2) with one view is effectively PEER. We have also added functionalities and visualisations to interpret the factors before regressing them out for eQTL mapping or any other downstream analysis.

I’ve built a wrapper here: https://github.com/bioFAM/PEER

Let me know if you have any questions. We have a Slack channel where I provide individualised help. The link is in the MOFA2 github.

We have not made the official release yet as we would like to get some feedback how this is working and how intuitive this is. Please let me know about your experience

Best, Ricard.

On Thu, Nov 11, 2021 at 8:45 PM ketkijoshi278 @.***> wrote:

Hello, I tried to use command cmake ./.. But its giving error. The error: File "", line 1 from distutils import sysconfig; print sysconfig.get_python_lib() ^ SyntaxError: invalid syntax CMake Error at python/CMakeLists.txt:49 (if): if given arguments:

"(" "NOT" "EXISTS" "File \"\", line 1 from distutils import sysconfig" " print sysconfig.get_python_inc() ^

SyntaxError: invalid syntax" ")"

Unknown arguments specified

-- Configuring incomplete, errors occurred!

Can anyone please help me out with this? Thank you

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https://github.com/mz2/peer/pull/15 Commit Summary

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(300 files https://github.com/mz2/peer/pull/15/files)