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mz2 / peer

A factor analysis package
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Correlated PEER factors #17

Open epigenomics22 opened 2 years ago

epigenomics22 commented 2 years ago

I have a voom normalized matrix of 3863 genes and 192 individuals. I ran PEER at n=50. I see PEER factors are all independent until n=35. After that pair-wise correlation of PEER factors are highly correlated. Could you please explain me in what conditions it can happen?

jingydz commented 1 year ago

I have a voom normalized matrix of 3863 genes and 192 individuals. I ran PEER at n=50. I see PEER factors are all independent until n=35. After that pair-wise correlation of PEER factors are highly correlated. Could you please explain me in what conditions it can happen?

May I ask how you successfully installed the Peer software?