Open robinschmid opened 10 months ago
https://github.com/robinschmid/annotation_validation/blob/main/metadata_validator/metadata/nih_main_columns.tsv
This table is used to annotate compounds based on their neutral mass and structure (smiles/inchi)
https://github.com/robinschmid/annotation_validation/tree/main/metadata_validator
There are some definitions for column validation and formats here:
https://github.com/robinschmid/annotation_validation/blob/main/metadata_validator/metadata_validator.ipynb
pandera: https://pandera.readthedocs.io/en/stable/
Validate the metadata table
https://github.com/robinschmid/annotation_validation/blob/main/metadata_validator/metadata/nih_main_columns.tsv
This table is used to annotate compounds based on their neutral mass and structure (smiles/inchi)
First code currently lives in
https://github.com/robinschmid/annotation_validation/tree/main/metadata_validator
There are some definitions for column validation and formats here:
https://github.com/robinschmid/annotation_validation/blob/main/metadata_validator/metadata_validator.ipynb
Schema for validation of tables
pandera: https://pandera.readthedocs.io/en/stable/