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n-riesco / ijavascript

IJavascript is a javascript kernel for the Jupyter notebook
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Failure to install using node@9.2.0 and npm@5.5.1 (zeromq dependency fails to install) #124

Closed n-riesco closed 2 years ago

n-riesco commented 6 years ago

Moved from https://github.com/n-riesco/ijavascript/issues/123#issuecomment-345123748

I'm on macHighSierra 10.13.1

I have nodejs and npm installed:

christophers-MacBook-Pro:~ christophervillanueva$ node --version v9.2.0 christophers-MacBook-Pro:~ christophervillanueva$ npm --version 5.5.1

All installation steps in the README work until the last command; christophers-MacBook-Pro:~ christophervillanueva$ sudo npm install -g ijavascript Password: /usr/local/bin/ijs -> /usr/local/lib/node_modules/ijavascript/bin/ijavascript.js /usr/local/bin/ijsconsole -> /usr/local/lib/node_modules/ijavascript/bin/ijsconsole.js /usr/local/bin/ijsinstall -> /usr/local/lib/node_modules/ijavascript/bin/ijsinstall.js /usr/local/bin/ijskernel -> /usr/local/lib/node_modules/ijavascript/lib/kernel.js /usr/local/bin/ijsnotebook -> /usr/local/lib/node_modules/ijavascript/bin/ijsnotebook.js

zeromq@4.6.0 install /usr/local/lib/node_modules/ijavascript/node_modules/zeromq node scripts/prebuild-install.js || (node scripts/preinstall.js && node-gyp rebuild)

prebuild-install info begin Prebuild-install version 2.3.0 prebuild-install info looking for local prebuild @ prebuilds/zeromq-v4.6.0-node-v59-darwin-x64.tar.gz prebuild-install WARN install EACCES: permission denied, access '/Users/christophervillanueva/.npm'

fs.js:905 return binding.mkdir(pathModule.toNamespacedPath(path), ^

Error: EACCES: permission denied, mkdir '/usr/local/lib/node_modules/ijavascript/node_modules/zeromq/zmq' at Object.fs.mkdirSync (fs.js:905:18) at Object. (/usr/local/lib/node_modules/ijavascript/node_modules/zeromq/scripts/preinstall.js:89:8) at Module._compile (module.js:641:30) at Object.Module._extensions..js (module.js:652:10) at Module.load (module.js:560:32) at tryModuleLoad (module.js:503:12) at Function.Module._load (module.js:495:3) at Function.Module.runMain (module.js:682:10) at startup (bootstrap_node.js:191:16) at bootstrap_node.js:613:3 npm ERR! code ELIFECYCLE npm ERR! errno 1 npm ERR! zeromq@4.6.0 install: node scripts/prebuild-install.js || (node scripts/preinstall.js && node-gyp rebuild) npm ERR! Exit status 1 npm ERR! npm ERR! Failed at the zeromq@4.6.0 install script. npm ERR! This is probably not a problem with npm. There is likely additional logging output above.

npm ERR! A complete log of this run can be found in: npm ERR! /Users/christophervillanueva/.npm/_logs/2017-11-17T02_08_30_334Z-debug.log

Any suggestions?

n-riesco commented 6 years ago

@chrisVillanueva As a workaround for the time being, I'd suggest to use a local install. See instructions here: http://n-riesco.github.io/ijavascript/doc/install.md.html

n-riesco commented 6 years ago

@chrisVillanueva I can't find node@9.2.0 on brew. How did you install node and npm?

npm@5.5.1 is compatible with node@9 (see https://github.com/nodejs/node/issues/16649 and https://github.com/npm/npm/issues/19019 ).

From https://github.com/nodejs/node/pull/16509 I understand that node@9.2.0 comes with a patched version of npm@5.5.1 to fix this incompatibility.

n-riesco commented 6 years ago

I've got to reproduce this issue using docker and node:latest:

$ docker pull node:latest
[...]

$ docker run -ti node:latest /bin/bash
root@0fe57d81177d:/# npm --versions
{ npm: '5.5.1',
  ares: '1.13.0',
  cldr: '32.0',
  http_parser: '2.7.0',
  icu: '60.1',
  modules: '59',
  nghttp2: '1.25.0',
  node: '9.2.0',
  openssl: '1.0.2m',
  tz: '2017c',
  unicode: '10.0',
  uv: '1.16.1',
  v8: '6.2.414.44-node.11',
  zlib: '1.2.11' }

root@0fe57d81177d:/# apt-get update && apt-get install ipython ipython-notebook
[...]

root@0fe57d81177d:/# npm install -g ijavascript
/usr/local/bin/ijs -> /usr/local/lib/node_modules/ijavascript/bin/ijavascript.js
/usr/local/bin/ijsinstall -> /usr/local/lib/node_modules/ijavascript/bin/ijsinstall.js
/usr/local/bin/ijsnotebook -> /usr/local/lib/node_modules/ijavascript/bin/ijsnotebook.js
/usr/local/bin/ijskernel -> /usr/local/lib/node_modules/ijavascript/lib/kernel.js
/usr/local/bin/ijsconsole -> /usr/local/lib/node_modules/ijavascript/bin/ijsconsole.js

> zeromq@4.6.0 install /usr/local/lib/node_modules/ijavascript/node_modules/zeromq
> node scripts/prebuild-install.js || (node scripts/preinstall.js && node-gyp rebuild)

prebuild-install info begin Prebuild-install version 2.3.0
prebuild-install info looking for local prebuild @ prebuilds/zeromq-v4.6.0-node-v59-linux-x64.tar.gz
prebuild-install WARN install EACCES: permission denied, access '/root/.npm'

fs.js:905
  return binding.mkdir(pathModule.toNamespacedPath(path),
                 ^

Error: EACCES: permission denied, mkdir '/usr/local/lib/node_modules/ijavascript/node_modules/zeromq/zmq'
    at Object.fs.mkdirSync (fs.js:905:18)
    at Object.<anonymous> (/usr/local/lib/node_modules/ijavascript/node_modules/zeromq/scripts/preinstall.js:89:8)
    at Module._compile (module.js:641:30)
    at Object.Module._extensions..js (module.js:652:10)
    at Module.load (module.js:560:32)
    at tryModuleLoad (module.js:503:12)
    at Function.Module._load (module.js:495:3)
    at Function.Module.runMain (module.js:682:10)
    at startup (bootstrap_node.js:191:16)
    at bootstrap_node.js:613:3
npm ERR! code ELIFECYCLE
npm ERR! errno 1
npm ERR! zeromq@4.6.0 install: `node scripts/prebuild-install.js || (node scripts/preinstall.js && node-gyp rebuild)`
npm ERR! Exit status 1
npm ERR! 
npm ERR! Failed at the zeromq@4.6.0 install script.
npm ERR! This is probably not a problem with npm. There is likely additional logging output above.

npm ERR! A complete log of this run can be found in:
npm ERR!     /root/.npm/_logs/2017-11-20T08_20_08_432Z-debug.log
n-riesco commented 6 years ago

Again, for the time being, until node@9 and npm@5.5 fix their incompatibilities, I recommend to install IJavascript locally:

$ npm config set prefix ~

$ npm install -g ijavascript
[...]

$ export PATH=$PATH:$HOME/bin

$ ijs --versions
ijavascript 5.0.20
jmp 1.0.0
jp-kernel 0.1.5
nel 0.5.7
uuid 3.1.0
zeromq 4.6.0
freiit commented 6 years ago

I had the same issue with node 10.4.1 and newest npm. Fixed by

npm --unsafe-perm install -g ijavascript
n-riesco commented 6 years ago

@freiit --usafe-perm is only needed for installations by the root user. Pleae, see #146 .

Masterxilo commented 5 years ago

I have the same problem.

n-riesco commented 5 years ago

@Masterxilo , just to confirm the issue you're seeing is #179?

michael-ziedalski commented 5 years ago

I have the same exact issue, have a fully updated node + npm, and freit's solution did not seem to work. Is there something else that can be tried to solve this serious bug?

n-riesco commented 5 years ago

@michael-ziedalski Please, have a look at the requirements listed in #184.

If the info in #184 doesn't help, please, open a new issue and post what commands you are running and their output.