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nadeemlab
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DeepLIIF
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
https://deepliif.org
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Bump opencv-python from 4.5.3.56 to 4.8.1.78
#43
dependabot[bot]
closed
1 week ago
0
Updated Model Training
#42
wendywangwwt
opened
3 weeks ago
1
Inference is extremely slow
#41
jackhanyuan
closed
1 month ago
2
Bad Segmentation for IHC Images with cytoplasm staining
#40
pouya-codes
closed
1 month ago
1
Select evaluation metrics for generated IHC images from H&E images
#39
linhduongtuan
closed
2 months ago
4
Using only immunofluoresnce images without HE staining
#38
KarlKaise
closed
6 months ago
2
Synthetic Data Generation (SDG) Model & Minor Updates
#37
wendywangwwt
closed
7 months ago
0
Inconsistency Between Cloud Deployment and API Call Results
#36
HaozhongMa
closed
7 months ago
6
Improved Compatibility of DeepLIIFExt & Reduced GPU Usage for Eager Mode Inference
#35
wendywangwwt
closed
8 months ago
6
Bump org.json:json from 20211205 to 20231013 in /ImageJ_Plugin
#34
dependabot[bot]
closed
9 months ago
0
pre-training model
#33
Lazy5233
closed
9 months ago
1
error when trying to run this line: docker run -it -v `pwd`:`pwd` -w `pwd` cuda/deepliif deepliif test --input-dir Sample_Large_Tissues
#32
najahc
closed
10 months ago
13
can't make it on open platform:https://deepliif.org/
#31
xliuPhd
closed
1 year ago
2
Standardized model initialization, new DeepLIIFExt model class, testing framework setup
#30
wendywangwwt
closed
1 year ago
10
Initialize model using DeepLIIFModel class in inference & Testing framework setup
#29
wendywangwwt
closed
1 year ago
4
How can I obtain the coordinates of seg?
#28
wzzwh110
closed
1 year ago
0
Dataset Links Request
#27
Salmck
closed
1 year ago
1
Bad Segmentation with Large IHC Images
#26
Salmck
closed
1 year ago
4
Improved Training Opts Loading in test.py and Stable Inference
#25
wendywangwwt
closed
1 year ago
7
Stabilize Inference Results
#24
wendywangwwt
closed
1 year ago
4
Merge main into extension + minor fixes
#23
wendywangwwt
closed
1 year ago
1
replaced \r\n with \n
#22
wendywangwwt
closed
1 year ago
1
Could you provide the code about generating the pseudo ground truth density map on BCData?
#21
windygoo
closed
1 year ago
1
how to change Segmentation Threshold, size gating and marker threshold in the local CLI version
#20
WeiLiuY
closed
2 years ago
1
how to calculate Percentage of IHC+ cell in WSI
#19
WeiLiuY
closed
2 years ago
1
Possible function name change
#18
jimmymathews
closed
2 years ago
0
Could you provide the code about calculating precision, recall and f1-score on the cell detection task?
#17
AOTY-szy
closed
2 years ago
1
Fix two errors in Dockerfile
#16
desaixie
closed
2 years ago
0
DeepLIIF dataset
#15
AndrewTal
closed
2 years ago
2
Fix cli visualize command issues
#14
wendywwang
closed
2 years ago
0
[WIP] Mkdocs documentation
#13
ricdodds
closed
2 years ago
0
Rebased: little fixes, extensions to visualizer, ddp, deterministic training
#12
wendywwang
closed
2 years ago
1
Wmla deployment
#11
drewmibm
closed
2 years ago
1
little fixes, extensions to visualizer, ddp, deterministic training
#10
wendywwang
closed
2 years ago
21
deepliif CLI and inference on multiple GPUs using Dask
#9
ricdodds
closed
2 years ago
2
Serialize models using Torchscript
#8
ricdodds
closed
2 years ago
0
Model deployment with Torchserve
#7
ricdodds
closed
2 years ago
0
Allow consumer to set tile_size
#6
ricdodds
closed
2 years ago
0
Color correction
#5
ricdodds
closed
2 years ago
0
Extract post-processing segmentation mask into deepliif package
#4
ricdodds
closed
2 years ago
0
deepliif python package
#3
ricdodds
closed
2 years ago
0
Docker Container and Post-Processing
#2
jommarin
closed
2 years ago
2
Missing import modules
#1
SWFarag
closed
3 years ago
1