nadeemlab / SPT

Spatial profiling toolbox for spatial characterization of tumor immune microenvironment in multiplex images
https://oncopathtk.org
Other
21 stars 2 forks source link

Remove support for all-study pulls in `FeatureMatrixExtractor` #187

Closed CarlinLiao closed 1 year ago

CarlinLiao commented 1 year ago

Per in-person discussion, this is a feature that substantially increases the complexity of FeatureMatrixExtractor implementation and understanding to support a use case we don't think exists. If it does, it can be substituted by creating a stripped-down FeatureMatrixExtractor for a list of all studies with low efficiency loss.