Compartmentalize DGL and torch usage to `histocartography` and `cg_gnn_helper`

nadeemlab / SPT

Spatial profiling toolbox for spatial characterization of tumor immune microenvironment in multiplex images

https://oncopathtk.org

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Compartmentalize DGL and torch usage to `histocartography` and `cg_gnn_helper` #273

Closed CarlinLiao closed 11 months ago

CarlinLiao commented 11 months ago

To close #271. Future changes will extricate histocartography and cg_gnn_helper into a separate plugin as described in #272.

CarlinLiao commented 11 months ago

All tests pass.

jimmymathews commented 11 months ago

In testing I encountered an issue I have encountered before, where the prereqs image has outdated layers (apt index/servers list I think). To deal with this I added a "NOCACHE=1" option to the Makefile, which one can use in such situations.

CarlinLiao commented 11 months ago

Could you release this to pip?

jimmymathews commented 11 months ago

Done.