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nadeemlab / SPT

Spatial profiling toolbox for spatial characterization of tumor immune microenvironment in multiplex images (https://oncopathtk.org)
https://oncopathtk.org
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Consolidating by bringing in spt plugin repository contents #323

Closed jimmymathews closed 2 months ago

jimmymathews commented 3 months ago

This refers to plugins branch.

The purpose of this is to consolidate source code for the overall SPT work into this (SPT) repository.

Some outstanding tasks/issues:

  1. The process to build the plugin containers is not yet documented. Instead of documentation, we can just add build capability into the overall build process (i.e. make build-docker-images). We discussed accomplishing this by writing a similar but different version of the DOCKER_PUSH_TARGETS and DOCKER_PUSH_TARGETS Makefile targets.
  2. Add version-controlled version information for the plugins.
  3. Either some Dockerfile line or the Makefile target needs to invoke either git clone or git submodule update or something similar to get the remote source to be available to the container.