nadeemlab / SPT

Spatial profiling toolbox for spatial characterization of tumor immune microenvironment in multiplex images
https://oncopathtk.org
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Single-sample computation timeout #331

Closed jimmymathews closed 3 months ago

jimmymathews commented 5 months ago

The single-sample computation containers can sometimes hang indefinitely in certain exceptional circumstances. Implement a liberal timeout, perhaps 5 minutes, at the level of metric computation job, so that the worker containers will not be locked up in stale computations.