nadeemlab / SPT

Spatial profiling toolbox for spatial characterization of tumor immune microenvironment in multiplex images
https://oncopathtk.org
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Cache GNN plot #333

Closed jimmymathews closed 5 months ago

jimmymathews commented 5 months ago

Although the GNN plot (endpoint importance-fraction-plot) relies on potentially-cached fractions inputs, the large number of queries that are made to these high-level fractions means that the overall plot creation is rather slow, taking a few minutes. I think this could be due to a large number of database connections for trivial metadata.

To address this, make sure that the final result is also cached.