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naglemi / GMOdetectoR

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Need ability to quickly evaluate results of binarization as transgenic or not #9

Open naglemi opened 4 years ago

naglemi commented 4 years ago

To quickly see how well classification of plants as transgenic is working, modify extract_plot_grid_item to accept an additional input of a table of metrics used for determination and print these in the title or subtitle for each false color image that the function produces.

naglemi commented 4 years ago

Added Python function label_GMOs which takes a list of explants which are believed transgenic, the grid type ID, and an RGB or hyperspectral false color image... then outputs labels superimposed over the images.

Still need to output hyperspectral false color images from R into a PIL-friendly format, and automate this whole process.