Add options to run NMF from cluster and import back the results to shiny

[naikai]

run-NMF.sh to get the NMF results

Add a Load module to check for NMF results before NMF module runs?

[naikai]

When user click run NMF in the NMF module, the program will generate a pop up window if the sample size is above 500. Then the program will send the command through yabi to run NMF on the cluster.

Things to be run and saved on the cluster:

• NMF - groups, features, consensus
• t-SNE - 2D and 3D
• DESeq2 - dds

Save all of them in a single icash.rda file and load them back to icash from the load data page

[naikai]

Shiny part is done (Only works for real run) Now needs to add those functions into run-NMF.sh on bnbdev

[naikai]

Done.

Now needs to add links between yabi and icash and send out email and download links once the submitted job is finished.

[naikai]

IF sample_size >= 200

• Pop up window asking whether to run NMF on local machine
  • if (Yes) Run NMF on Local machine
  • else (No)
  • if Yabi is setup on server
    • if (Yes) Run Yabi
    • else (No) Run NMF on Local machine
• else
  • Run NMF on Local machine

[naikai]

run-NMF.sh successfully run and gzip all the NMF output files through yabish command Download link from the email also works fine Now need to add static options for yabish_submit.exp',yabish_status.exp, andyabish_logout.exp`

[naikai]

Now continue working on this on #55