coloring for PCA and t-SNE seems to be off when we run normalization or transformation

naikai / sake

sake

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coloring for PCA and t-SNE seems to be off when we run normalization or transformation #51

Closed naikai closed 8 years ago

naikai commented 8 years ago

Need to double check.

naikai commented 8 years ago

Problem comes from the fact that we automatically reorder heatmap_data after NMF is run. So now we will match the order or heatmap_data and nmf_groups$nmf_subtypes whenever we want to generate color codes for plotting.