In saved NMF run, the .rda will include tsne_2d and tsne_3d which is run using original sample order.
However, we implement the option to automatically reorder the heatmap_data once we hit run NMF, so the ordering of the samples will be different between these two data
We can create another data called filtered_data which will be used by heatmap, PCA, and t-SNE plot.
Then the ordering can be done for each of them separately.
Since PCA and t-SNE plots still need to use the Upload Gene List and other filtering functions, we isolate heatmap_data alone and let all the other plot functions use another variable plot_data
In saved NMF run, the .rda will include
tsne_2d
andtsne_3d
which is run using original sample order. However, we implement the option to automatically reorder theheatmap_data
once we hitrun NMF
, so the ordering of the samples will be different between these two data We can create another data calledfiltered_data
which will be used byheatmap
,PCA
, andt-SNE
plot. Then the ordering can be done for each of them separately.