naikai / sake

sake
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t-SNE plot is off for rdata loaded from previous NMF run #52

Closed naikai closed 7 years ago

naikai commented 8 years ago

In saved NMF run, the .rda will include tsne_2d and tsne_3d which is run using original sample order. However, we implement the option to automatically reorder the heatmap_data once we hit run NMF, so the ordering of the samples will be different between these two data We can create another data called filtered_data which will be used by heatmap, PCA, and t-SNE plot. Then the ordering can be done for each of them separately.

naikai commented 7 years ago

Since PCA and t-SNE plots still need to use the Upload Gene List and other filtering functions, we isolate heatmap_data alone and let all the other plot functions use another variable plot_data