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sake
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Error's installing on Ubutnu 16.10 #59

Closed molikd closed 7 years ago

molikd commented 7 years ago

I keep getting this error when I try to install:

> shiny::runApp(system.file("sake", package="sake"))

Listening on http://127.0.0.1:3557
Warning in tag("div", list(...)) :
  restarting interrupted promise evaluation
Warning in tag("div", list(...)) : internal error -3 in R_decompress1
Warning: Error in tag: lazy-load database '/home/dmolik/R/x86_64-pc-linux-gnu-library/3.3/d3heatmap/R/d3heatmap.rdb' is corrupt
Stack trace (innermost first):
    72: tag
    71: tags$div
    70: div
    69: tag
    68: tags$div
    67: div
    66: tag
    65: tags$div
    64: div
    63: box
    62: tag
    61: tags$div
    60: div
    59: conditionalPanel
    58: tag
    57: tags$div
    56: div
    55: fluidRow
    54: tag
    53: tags$div
    52: div
    51: tabItem
    50: lapply
    49: tabItems
    48: tag
    47: tags$section
    46: tag
    45: tags$div
    44: div
    43: dashboardBody
     1: shiny::runApp
Error : lazy-load database '/home/dmolik/R/x86_64-pc-linux-gnu-library/3.3/d3heatmap/R/d3heatmap.rdb' is corrupt

When I install the package from the cran repo it goes fine: 

> install.packages("d3heatmap")
Installing package into ‘/home/dmolik/R/x86_64-pc-linux-gnu-library/3.3’
(as ‘lib’ is unspecified)
trying URL 'https://ftp.ussg.iu.edu/CRAN/src/contrib/d3heatmap_0.6.1.1.tar.gz'
Content type 'application/x-gzip' length 507140 bytes (495 KB)
==================================================
downloaded 495 KB

* installing *source* package ‘d3heatmap’ ...
** package ‘d3heatmap’ successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (d3heatmap)

The downloaded source packages are in
    ‘/tmp/RtmpLundlR/downloaded_packages’

And when I try to install from github, it will not install:

> devtools::install_github("rstudio/d3heatmap")
Downloading GitHub repo rstudio/d3heatmap@master
from URL https://api.github.com/repos/rstudio/d3heatmap/zipball/master
Error in eapply(ns_env(pkg), force, all.names = TRUE) : 
  lazy-load database '/home/dmolik/R/x86_64-pc-linux-gnu-library/3.3/d3heatmap/R/d3heatmap.rdb' is corrupt
In addition: Warning messages:
1: In eapply(ns_env(pkg), force, all.names = TRUE) :
  restarting interrupted promise evaluation
2: In eapply(ns_env(pkg), force, all.names = TRUE) :
  internal error -3 in R_decompress1
naikai commented 7 years ago

According to this:

https://github.com/wch/movies/issues/3

The internal error -3 often happens when you use install_github to install a package that's currently loaded; try restarting R and running the app again.

Can you please test it and let me know if it fixes the problem? Thanks.

On Jan 28, 2017, at 4:08 PM, David Molik notifications@github.com<mailto:notifications@github.com> wrote:

I keep getting this error when I try to install:

shiny::runApp(system.file("sake", package="sake"))

Listening on http://127.0.0.1:3557 Warning in tag("div", list(...)) : restarting interrupted promise evaluation Warning in tag("div", list(...)) : internal error -3 in R_decompress1 Warning: Error in tag: lazy-load database '/home/dmolik/R/x86_64-pc-linux-gnu-library/3.3/d3heatmap/R/d3heatmap.rdb' is corrupt Stack trace (innermost first): 72: tag 71: tags$div 70: div 69: tag 68: tags$div 67: div 66: tag 65: tags$div 64: div 63: box 62: tag 61: tags$div 60: div 59: conditionalPanel 58: tag 57: tags$div 56: div 55: fluidRow 54: tag 53: tags$div 52: div 51: tabItem 50: lapply 49: tabItems 48: tag 47: tags$section 46: tag 45: tags$div 44: div 43: dashboardBody 1: shiny::runApp Error : lazy-load database '/home/dmolik/R/x86_64-pc-linux-gnu-library/3.3/d3heatmap/R/d3heatmap.rdb' is corrupt

When I install the package from the cran repo it goes fine:

install.packages("d3heatmap") Installing package into ‘/home/dmolik/R/x86_64-pc-linux-gnu-library/3.3’ (as ‘lib’ is unspecified) trying URL 'https://ftp.ussg.iu.edu/CRAN/src/contrib/d3heatmap_0.6.1.1.tar.gz' Content type 'application/x-gzip' length 507140 bytes (495 KB)

downloaded 495 KB

The downloaded source packages are in ‘/tmp/RtmpLundlR/downloaded_packages’

And when I try to install from github, it will not install:

devtools::install_github("rstudio/d3heatmap") Downloading GitHub repo rstudio/d3heatmap@master from URL https://api.github.comhttp://api.github.com/repos/rstudio/d3heatmap/zipball/master Error in eapply(ns_env(pkg), force, all.names = TRUE) : lazy-load database '/home/dmolik/R/x86_64-pc-linux-gnu-library/3.3/d3heatmap/R/d3heatmap.rdb' is corrupt In addition: Warning messages: 1: In eapply(ns_env(pkg), force, all.names = TRUE) : restarting interrupted promise evaluation 2: In eapply(ns_env(pkg), force, all.names = TRUE) : internal error -3 in R_decompress1

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molikd commented 7 years ago

after completely deleting the library and then reinstalling from github ( devtools::install_github("rstudio/d3heatmap") ) it worked like a skookum choocher

naikai commented 7 years ago

Great!

On Jan 28, 2017, at 4:12 PM, David Molik notifications@github.com<mailto:notifications@github.com> wrote:

after completely deleting the library and then reinstalling from github ( devtools::install_github("rstudio/d3heatmap") ) it worked like a skookum choocher

— You are receiving this because you commented. Reply to this email directly, view it on GitHubhttps://github.com/naikai/sake/issues/59#issuecomment-275875011, or mute the threadhttps://github.com/notifications/unsubscribe-auth/AHi_OfU_mhZFKDGiu39eKUEDIOMkBWdSks5rW69VgaJpZM4Lwnhc.