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naikai / sake

sake
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List of all required package versions for sake to fully function #82

Closed nickhir closed 1 year ago

nickhir commented 2 years ago

Hi,

I want to use sake for my analysis, because it seems just right for what I am trying to do, but right now I am unable to get it to run properly. I install everything according to the README file (using the Quick update 2021-03-25), and the program starts as intended, but the examples from the vignette do not run as intended (same problem as #79 ). I also tried to reinstall everything using R 3.6.0, but unfortunately the result was the same Thus, I was wondering, if somebody with a working sake installation might be able to provide a detailed list of all the packages he or she is using so I can replicate it.

Thanks for any help!

savytskanatalia commented 1 year ago

If you are still trying, I used the following commands (and following versions of tools) to get SAKE running. All versions pulled from previous issues here and tweaked until I could finally start it and upload the dataset.

# I reinstalled older versions of the packages: 
# plotly 4.9.2,  htmltools 0.5.0, htmlwidgets 1.5.2, 
# promises 1.1.1, crosstalk 1.1.0.1, and DT 0.16 
remove.packages("plotly")
remove.packages("htmltools")
remove.packages("htmlwidgets")
remove.packages("promises")
remove.packages("crosstalk")
remove.packages("DT")
install.packages("https://cran.r-project.org/src/contrib/Archive/crosstalk/crosstalk_1.1.0.1.tar.gz", repo=NULL, type="source")
install.packages("https://cran.r-project.org/src/contrib/Archive/promises/promises_1.1.1.tar.gz", repo=NULL, type="source")

install.packages("https://cran.r-project.org/src/contrib/Archive/plotly/plotly_4.9.2.tar.gz", repo=NULL, type="source")
install.packages("https://cran.r-project.org/src/contrib/Archive/htmltools/htmltools_0.5.0.tar.gz", repo=NULL, type="source")
install.packages("https://cran.r-project.org/src/contrib/Archive/htmlwidgets/htmlwidgets_1.5.2.tar.gz", repo=NULL, type="source")
install.packages("https://cran.r-project.org/src/contrib/Archive/DT/DT_0.16.tar.gz", repo=NULL, type="source")
# gage_2.36.0

# go even below the versions
# shiny 1.4.0.2
# shinydashboard 0.7.1
# shinythemes 1.1.2

remove.packages("shiny")
remove.packages("shinydashboard")
remove.packages("shinythemes")

install.packages("https://cran.r-project.org/src/contrib/Archive/shiny/shiny_1.4.0.2.tar.gz", repo=NULL, type="source")
install.packages("https://cran.r-project.org/src/contrib/Archive/shinydashboard/shinydashboard_0.7.1.tar.gz", repo=NULL, type="source")
install.packages("https://cran.r-project.org/src/contrib/Archive/shinythemes/shinythemes_1.1.2.tar.gz", repo=NULL, type="source")
naikai commented 1 year ago

Hi Natalia,

Thank you for this information. I will update the installation instructions.

Best,

Ray

On Wed, Nov 16, 2022 at 10:19 AM Natalia Savytska @.***> wrote:

If you are still trying, I used the following commands (and following versions of tools) to get SAKE running. All versions pulled from previous issues here and tweaked until I could finally start it and upload the dataset.

I reinstalled older versions of the packages:

plotly 4.9.2, htmltools 0.5.0, htmlwidgets 1.5.2,

promises 1.1.1, crosstalk 1.1.0.1, and DT 0.16

remove.packages("plotly") remove.packages("htmltools") remove.packages("htmlwidgets") remove.packages("promises") remove.packages("crosstalk") remove.packages("DT") install.packages("https://cran.r-project.org/src/contrib/Archive/crosstalk/crosstalk_1.1.0.1.tar.gz", repo=NULL, type="source") install.packages("https://cran.r-project.org/src/contrib/Archive/promises/promises_1.1.1.tar.gz", repo=NULL, type="source")

install.packages("https://cran.r-project.org/src/contrib/Archive/plotly/plotly_4.9.2.tar.gz", repo=NULL, type="source") install.packages("https://cran.r-project.org/src/contrib/Archive/htmltools/htmltools_0.5.0.tar.gz", repo=NULL, type="source") install.packages("https://cran.r-project.org/src/contrib/Archive/htmlwidgets/htmlwidgets_1.5.2.tar.gz", repo=NULL, type="source") install.packages("https://cran.r-project.org/src/contrib/Archive/DT/DT_0.16.tar.gz", repo=NULL, type="source")

gage_2.36.0

go even below the versions

shiny 1.4.0.2

shinydashboard 0.7.1

shinythemes 1.1.2

remove.packages("shiny") remove.packages("shinydashboard") remove.packages("shinythemes")

install.packages("https://cran.r-project.org/src/contrib/Archive/shiny/shiny_1.4.0.2.tar.gz", repo=NULL, type="source") install.packages("https://cran.r-project.org/src/contrib/Archive/shinydashboard/shinydashboard_0.7.1.tar.gz", repo=NULL, type="source") install.packages("https://cran.r-project.org/src/contrib/Archive/shinythemes/shinythemes_1.1.2.tar.gz", repo=NULL, type="source")

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