nanhung / pksensi

An R package for applying global sensitivity analysis in physiologically based kinetic modeling
https://nanhung.github.io/pksensi/
GNU Lesser General Public License v3.0
5 stars 3 forks source link

FW: about pksense #4

Closed fire-bot closed 4 years ago

fire-bot commented 4 years ago

Sent by Hsieh, Nan-Hung (nhsieh@cvm.tamu.edu). Created by fire.


From:Chimeddulam Dalaijamts
Sent: Tuesday, March 24, 2020 1:29 PM
To:Hsieh, Nan-Hung
Subject: RE: about pksense

Ok, thanks!

Chimka

From: Hsieh, Nan-Hung nhsieh@cvm.tamu.edu
Sent: Tuesday, March 24, 2020 1:29 PM
To: Chimeddulam Dalaijamts cdalaijamts@cvm.tamu.edu
Subject: RE: about pksense

There is another update. After solve_mcsim(...), you can directly use check(y), plot(y), or heat_check(y) without tell(x,y).

NH

From:Chimeddulam Dalaijamts
Sent: Tuesday, March 24, 2020 1:16 PM
To:Hsieh, Nan-Hung
Subject: RE: about pksense

I just found that solve_mcsim() has an option “generate.infile = FALSE”. I think now it works.

Thank you,

Chimka

From: Chimeddulam Dalaijamts
Sent: Tuesday, March 24, 2020 1:10 PM
To: Hsieh, Nan-Hung [nhsieh@cvm.tamu.edu](mailto:nhsieh@cvm.tamu.edu)
Subject: RE: about pksense

Again, “solve_mcsim” function generates input file automatically and does not load my created in and dat files. What should I do to fix this problem?

Starting time: 2020-03-24 12:45:36

Execute: ./mcsim.perc.v3.4.exe perc.GSA.setpoint.f.58p.in


MCSim v5.6.5

Copyright (c) 1993-2015 Free Software Foundation, Inc.

MCSim comes with ABSOLUTELY NO WARRANTY;

This is free software, and you are welcome to redistribute it

under certain conditions; see the GNU General Public License.

Error: Cannot open file "setpts.out".

Fatal errors. Exiting.

Thanks,

Chimka

From: Hsieh, Nan-Hung [nhsieh@cvm.tamu.edu](mailto:nhsieh@cvm.tamu.edu)
Sent: Tuesday, March 24, 2020 12:44 PM
To: Chimeddulam Dalaijamts [cdalaijamts@cvm.tamu.edu](mailto:cdalaijamts@cvm.tamu.edu)
Subject: RE: about pksense

The error message shows that the compiled model program doesn’t exist. You might need to make sure that the mcsim.perc.V3.4.exe exists in the working directory.

You can put the model program in the "C:/MinGW/msys/1.0/home/chimka/Perc/GSA" and renamed it “mcsim.perc.V3.4.exe” if needed.

Best,

Nan-Hung

From:Chimeddulam Dalaijamts
Sent: Tuesday, March 24, 2020 12:37 PM
To:Hsieh, Nan-Hung
Subject: about pksense

Hi Nan-Hung,

It seems ‘pksense’ package has been updated since I worked last time. When I tried to run “solve_mcsim” it indicates following error. Can you check the attached R-script, if there is any mistake in coding. Do I need all packages listed there?

Error in solve_mcsim(x, mName = mName, params = factors, infile.name = "perc.GSA.setpoint.f.58p.in", :

The mcsim.perc.v3.4.exe doesn't exist.

Thank you,

Chimka