nanograv / enterprise

ENTERPRISE (Enhanced Numerical Toolbox Enabling a Robust PulsaR Inference SuitE) is a pulsar timing analysis code, aimed at noise analysis, gravitational-wave searches, and timing model analysis.
https://enterprise.readthedocs.io
MIT License
65 stars 67 forks source link

Failure to detect installed astropy #334

Open aarchiba opened 1 year ago

aarchiba commented 1 year ago

I have a conda environment with astropy installed but I still get the message "Warning: cannot find astropy, units support will not be available."

conda list yields:

# packages in environment at /home/peridot/software/miniconda3/envs/enterprise-development:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
appdirs                   1.4.4              pyh9f0ad1d_0    conda-forge
arviz                     0.14.0             pyhd8ed1ab_0    conda-forge
astropy                   5.2.1           py310h0a54255_0    conda-forge
asttokens                 2.2.1              pyhd8ed1ab_0    conda-forge
attrs                     22.2.0             pyh71513ae_0    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backports                 1.0                pyhd8ed1ab_3    conda-forge
backports.functools_lru_cache 1.6.4              pyhd8ed1ab_0    conda-forge
black                     22.12.0         py310hff52083_0    conda-forge
brotli                    1.0.9                h166bdaf_8    conda-forge
brotli-bin                1.0.9                h166bdaf_8    conda-forge
brotlipy                  0.7.0           py310h5764c6d_1005    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.18.1               h7f98852_0    conda-forge
ca-certificates           2022.12.7            ha878542_0    conda-forge
certifi                   2022.12.7          pyhd8ed1ab_0    conda-forge
cffi                      1.15.1          py310h255011f_3    conda-forge
cfitsio                   4.2.0                hd9d235c_0    conda-forge
cftime                    1.6.2           py310hde88566_1    conda-forge
charset-normalizer        2.1.1              pyhd8ed1ab_0    conda-forge
click                     8.1.3           unix_pyhd8ed1ab_2    conda-forge
colorama                  0.4.6              pyhd8ed1ab_0    conda-forge
comm                      0.1.2              pyhd8ed1ab_0    conda-forge
contourpy                 1.0.7           py310hdf3cbec_0    conda-forge
corner                    2.2.1              pyhd8ed1ab_0    conda-forge
cryptography              39.0.0          py310h34c0648_0    conda-forge
curl                      7.87.0               hdc1c0ab_0    conda-forge
cycler                    0.11.0             pyhd8ed1ab_0    conda-forge
debugpy                   1.6.6           py310heca2aa9_0    conda-forge
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
emcee                     3.1.4              pyhd8ed1ab_0    conda-forge
enterprise-pulsar         3.3.4.dev2+g1ca6d38          pypi_0    pypi
entrypoints               0.4                pyhd8ed1ab_0    conda-forge
ephem                     4.1.4           py310h1fa729e_0    conda-forge
exceptiongroup            1.1.0              pyhd8ed1ab_0    conda-forge
executing                 1.2.0              pyhd8ed1ab_0    conda-forge
fftw                      3.3.10          nompi_hf0379b8_106    conda-forge
flake8                    6.0.0              pyhd8ed1ab_0    conda-forge
fonttools                 4.38.0          py310h5764c6d_1    conda-forge
freetype                  2.12.1               hca18f0e_1    conda-forge
future                    0.18.3             pyhd8ed1ab_0    conda-forge
gmp                       6.2.1                h58526e2_0    conda-forge
gsl                       2.7                  he838d99_0    conda-forge
hdf4                      4.2.15               h9772cbc_5    conda-forge
hdf5                      1.12.2          nompi_h4df4325_101    conda-forge
healpy                    1.16.2          py310h63f94f6_0    conda-forge
icu                       70.1                 h27087fc_0    conda-forge
idna                      3.4                pyhd8ed1ab_0    conda-forge
importlib-metadata        6.0.0              pyha770c72_0    conda-forge
importlib_metadata        6.0.0                hd8ed1ab_0    conda-forge
iniconfig                 2.0.0              pyhd8ed1ab_0    conda-forge
ipykernel                 6.21.0             pyh210e3f2_0    conda-forge
ipython                   8.9.0              pyh41d4057_0    conda-forge
jedi                      0.18.2             pyhd8ed1ab_0    conda-forge
jpeg                      9e                   h166bdaf_2    conda-forge
jplephem                  2.18               pyh78acc04_0    conda-forge
jupyter_client            8.0.2              pyhd8ed1ab_0    conda-forge
jupyter_core              5.2.0           py310hff52083_0    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
kiwisolver                1.4.4           py310hbf28c38_1    conda-forge
krb5                      1.20.1               h81ceb04_0    conda-forge
lcms2                     2.14                 hfd0df8a_1    conda-forge
ld_impl_linux-64          2.40                 h41732ed_0    conda-forge
lerc                      4.0.0                h27087fc_0    conda-forge
libaec                    1.0.6                hcb278e6_1    conda-forge
libblas                   3.9.0           16_linux64_openblas    conda-forge
libbrotlicommon           1.0.9                h166bdaf_8    conda-forge
libbrotlidec              1.0.9                h166bdaf_8    conda-forge
libbrotlienc              1.0.9                h166bdaf_8    conda-forge
libcblas                  3.9.0           16_linux64_openblas    conda-forge
libcurl                   7.87.0               hdc1c0ab_0    conda-forge
libdeflate                1.17                 h0b41bf4_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc-ng                 12.2.0              h65d4601_19    conda-forge
libgfortran-ng            12.2.0              h69a702a_19    conda-forge
libgfortran5              12.2.0              h337968e_19    conda-forge
libgomp                   12.2.0              h65d4601_19    conda-forge
libhwloc                  2.8.0                h32351e8_1    conda-forge
libiconv                  1.17                 h166bdaf_0    conda-forge
libjpeg-turbo             2.1.4                h166bdaf_0    conda-forge
liblapack                 3.9.0           16_linux64_openblas    conda-forge
libnetcdf                 4.8.1           nompi_h261ec11_106    conda-forge
libnghttp2                1.51.0               hff17c54_0    conda-forge
libnsl                    2.0.0                h7f98852_0    conda-forge
libopenblas               0.3.21          pthreads_h78a6416_3    conda-forge
libpng                    1.6.39               h753d276_0    conda-forge
libsodium                 1.0.18               h36c2ea0_1    conda-forge
libsqlite                 3.40.0               h753d276_0    conda-forge
libssh2                   1.10.0               hf14f497_3    conda-forge
libstdcxx-ng              12.2.0              h46fd767_19    conda-forge
libstempo                 2.4.5           py310h769672d_1    conda-forge
libtiff                   4.5.0                h6adf6a1_2    conda-forge
libuuid                   2.32.1            h7f98852_1000    conda-forge
libwebp-base              1.2.4                h166bdaf_0    conda-forge
libxcb                    1.13              h7f98852_1004    conda-forge
libxml2                   2.10.3               h7463322_0    conda-forge
libzip                    1.9.2                hc929e4a_1    conda-forge
libzlib                   1.2.13               h166bdaf_4    conda-forge
loguru                    0.6.0           py310hff52083_2    conda-forge
matplotlib-base           3.6.3           py310he60537e_0    conda-forge
matplotlib-inline         0.1.6              pyhd8ed1ab_0    conda-forge
mccabe                    0.7.0              pyhd8ed1ab_0    conda-forge
metis                     5.1.0             h58526e2_1006    conda-forge
mpfr                      4.1.0                h9202a9a_1    conda-forge
munkres                   1.1.4              pyh9f0ad1d_0    conda-forge
mypy_extensions           0.4.3           py310hff52083_6    conda-forge
ncurses                   6.3                  h27087fc_1    conda-forge
nest-asyncio              1.5.6              pyhd8ed1ab_0    conda-forge
nestle                    0.2.0                      py_0    conda-forge
netcdf4                   1.6.2           nompi_py310h55e1e36_100    conda-forge
numpy                     1.24.1          py310h8deb116_0    conda-forge
openjpeg                  2.5.0                hfec8fc6_2    conda-forge
openssl                   3.0.7                h0b41bf4_2    conda-forge
packaging                 23.0               pyhd8ed1ab_0    conda-forge
pandas                    1.5.3           py310h9b08913_0    conda-forge
parso                     0.8.3              pyhd8ed1ab_0    conda-forge
pathspec                  0.11.0             pyhd8ed1ab_0    conda-forge
pexpect                   4.8.0              pyh1a96a4e_2    conda-forge
pgplot                    5.2.2             h68245ad_1008    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pillow                    9.4.0           py310h4927cde_0    conda-forge
pint-pulsar               0.9.3           py310hff52083_0    conda-forge
pip                       23.0               pyhd8ed1ab_0    conda-forge
platformdirs              2.6.2              pyhd8ed1ab_0    conda-forge
pluggy                    1.0.0              pyhd8ed1ab_5    conda-forge
pooch                     1.6.0              pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.36             pyha770c72_0    conda-forge
psutil                    5.9.4           py310h5764c6d_0    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pure_eval                 0.2.2              pyhd8ed1ab_0    conda-forge
pycodestyle               2.10.0             pyhd8ed1ab_0    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pyerfa                    2.0.0.1         py310hde88566_3    conda-forge
pyflakes                  3.0.1              pyhd8ed1ab_0    conda-forge
pygments                  2.14.0             pyhd8ed1ab_0    conda-forge
pyopenssl                 23.0.0             pyhd8ed1ab_0    conda-forge
pyparsing                 3.0.9              pyhd8ed1ab_0    conda-forge
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
pytest                    7.2.1              pyhd8ed1ab_0    conda-forge
pytest-runner             6.0.0              pyhd8ed1ab_0    conda-forge
python                    3.10.8          h4a9ceb5_0_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python_abi                3.10                    3_cp310    conda-forge
pytz                      2022.7.1           pyhd8ed1ab_0    conda-forge
pyyaml                    6.0             py310h5764c6d_5    conda-forge
pyzmq                     25.0.0          py310h059b190_0    conda-forge
readline                  8.1.2                h0f457ee_0    conda-forge
requests                  2.28.2             pyhd8ed1ab_0    conda-forge
scikit-sparse             0.4.8           py310hedf46ba_1    conda-forge
scipy                     1.10.0          py310h8deb116_0    conda-forge
setuptools                66.1.1             pyhd8ed1ab_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
stack_data                0.6.2              pyhd8ed1ab_0    conda-forge
suitesparse               5.10.1               h9e50725_1    conda-forge
tbb                       2021.7.0             h924138e_1    conda-forge
tempo2                    2022.05.1            h1c8e422_2    conda-forge
tk                        8.6.12               h27826a3_0    conda-forge
tokenize-rt               5.0.0                    pypi_0    pypi
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
tornado                   6.2             py310h5764c6d_1    conda-forge
traitlets                 5.9.0              pyhd8ed1ab_0    conda-forge
typing-extensions         4.4.0                hd8ed1ab_0    conda-forge
typing_extensions         4.4.0              pyha770c72_0    conda-forge
tzdata                    2022g                h191b570_0    conda-forge
uncertainties             3.1.7              pyhd8ed1ab_0    conda-forge
unicodedata2              15.0.0          py310h5764c6d_0    conda-forge
urllib3                   1.26.14            pyhd8ed1ab_0    conda-forge
wcwidth                   0.2.6              pyhd8ed1ab_0    conda-forge
wheel                     0.38.4             pyhd8ed1ab_0    conda-forge
xarray                    2023.1.0           pyhd8ed1ab_0    conda-forge
xarray-einstats           0.5.1              pyhd8ed1ab_0    conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    conda-forge
xorg-libx11               1.7.2                h7f98852_0    conda-forge
xorg-libxau               1.0.9                h7f98852_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xorg-xproto               7.0.31            h7f98852_1007    conda-forge
xz                        5.2.6                h166bdaf_0    conda-forge
yaml                      0.2.5                h7f98852_2    conda-forge
zeromq                    4.3.4                h9c3ff4c_1    conda-forge
zipp                      3.12.0             pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               h166bdaf_4    conda-forge
zstd                      1.5.2                h3eb15da_6    conda-forge
wzy-hb commented 1 year ago

Have you found a solution? I also have this question.

kdolum commented 1 year ago

The problem seems to be in libstempo. See https://github.com/vallis/libstempo/issues/51.