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nanopore-wgs-consortium / NA12878

Data and analysis for NA12878 genome on nanopore
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Format of FAST5 files in rel6 #111

Closed MaxNacemit closed 2 years ago

MaxNacemit commented 2 years ago

I need nanopore sequencing data to train a neural network. Do the FAST5 files in the rel6 version of the dataset provide the basecalled sequence in FASTQ format as an analysis? If not, how can I get both the raw nanopore sequencing data and the sequence in FASTQ format?

mattloose commented 2 years ago

Hi. Sorry - I saw that this has been closed. You can download the fast5 and the fastq and pair using read ID. The fast5 files themselves do not contain fastq data.