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nanopore-wgs-consortium / NA12878

Data and analysis for NA12878 genome on nanopore
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FAST5 files for cDNA reads #82

Open SaberHQ opened 4 years ago

SaberHQ commented 4 years ago

Dear all,

I am writing to kindly ask for FAST5 files for the cDNA runs (1D and 1D2) from all centres. They are provided for directRNA runs but it seems like that they are missing for cDNA reads:

https://github.com/nanopore-wgs-consortium/NA12878/blob/master/nanopore-human-transcriptome/fastq_fast5_bulk.md

If you believe it might take some time to upload and provide them, would you mind to share the FAST5 files for Bham Run1 (cDNA 1D and 1D2) as an example for benchmarking purpose?

Best, Saber.

mitenjain commented 4 years ago

Hi Saber,

Sure. We will update the documentation as well as share links for those data shortly.

Sorry for the hassle. Best regards, Miten

mitenjain commented 4 years ago

Hi Saber,

The signal files are now uploaded. Let us know if you get any issues accessing them.

Best regards, Miten

SaberHQ commented 4 years ago

Thanks for the FAST5 files @mitenjain I really appreciate it. I just realized that you also provided the second release of the data which are basecalled by Guppy 3.2.6 flip flop. Are you guys planning to provide separate links to download fastq files of each run/centre?