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nanopore-wgs-consortium / NA12878

Data and analysis for NA12878 genome on nanopore
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number of reads in summary and fastq files do not match #88

Closed vkkodali closed 3 years ago

vkkodali commented 4 years ago

Aren't the number of reads in the summary and fastq files expected to be the same? 

$ zgrep -v '^filename' NA12878-cDNA_All_Guppy_3.2.6_sequencing_summary.txt.gz | cut -f1,2 | sort -u | wc -l
21229110

$ zcat NA12878-cDNA_All_Guppy_3.2.6.fastq.gz | paste - - - - | wc -l
24531552
mitenjain commented 4 years ago

They should match. I'll look into this and get back here in a couple of days.

mitenjain commented 3 years ago

Hello,

We have now updated the data and fixed the issues in rel2. The new basecalls are with Guppy 4.2.2. Hope this helps.

Let us know if you have any questions.