nanoporetech / DTR-phage-pipeline

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snakemake: error: unrecognized arguments: -r #12

Closed ttschulze closed 7 months ago

ttschulze commented 7 months ago

I am working through the tutorial to get this pipeline working on a cluster using a conda environment as recommended.

As I go to run the test with default settings: snakemake --use-conda -p -r -j 10

I run into the following error: snakemake: error: unrecognized arguments: -r

I assume it might be a missing library, or something with conda, was hoping to clarify what this flag is for and which library it might require?

Thank you!